IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1670	 49.54	0	1827181..1828365	-	394	15641697	-	VC1693	-	cytochrome c-type protein TorC
1671	 45.21	0	1828412..1828630	-	72	15641698	-	VC1694	-	napE protein
1672	 46.38	0	1829274..1830116	-	280	15641699	-	VC1695	-	formate transporter 1, putative
1673	 47.51	0	1830321..1830701	+	126	15641700	-	VC1696	-	DNA-binding protein inhibitor Id-2-related protein
1674	 49.46	0	1830805..1831635	+	276	15641701	-	VC1697	-	hypothetical protein
1675	 47.07	0	1831628..1832275	+	215	15641702	-	VC1698	-	hypothetical protein
1676	 44.81	0	1832408..1832677	+	89	15641703	-	VC1699	-	hypothetical protein
1677	 45.79	0	1832906..1833451	+	181	15641704	-	VC1700	-	intracellular septation protein A
1678	 48.53	0	1833589..1834029	+	146	15641705	-	VC1701	-	hypothetical protein
1679	 50.51	0	1834104..1834400	+	98	15641706	-	VC1702	-	YciI-like protein
1680	 50.00	0	1834309..1834800	+	163	15641707	-	VC1703	-	hypothetical protein
1681	 50.35	0	1835075..1837360	-	761	15641708	-	VC1704	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1682	 48.96	0	1837614..1837709	+	31	15641709	-	VC1705	-	hypothetical protein
1683	 52.18	+1	1837756..1838673	+	305	15641710	-	VC1706	-	transcriptional activator MetR
1684	 44.61	0	1838680..1838883	-	67	15641711	-	VC1707	-	hypothetical protein
1685	 48.91	0	1838997..1839683	-	228	15641712	-	VC1708	-	hypothetical protein
1686	 48.14	0	1839907..1842675	+	922	15641713	-	VC1709	-	zinc protease
1687	 47.62	0	1842809..1845265	-	818	15641714	-	VC1710	-	hypothetical protein
1688	 50.80	0	1845545..1847914	+	789	15641715	-	VC1711	-	hypothetical protein
1689	 48.29	0	1847962..1848576	-	204	15641716	-	VC1712	-	hypothetical protein
1690	 48.87	0	1848654..1849097	+	147	15641717	-	VC1713	-	AsnC family transcriptional regulator
1691	 52.23	+1	1849179..1853654	-	1491	15641718	mukB	VC1714	-	cell division protein MukB
1692	 52.15	+1	1853651..1854394	-	247	15641719	-	VC1715	-	condesin subunit E
1693	 50.15	0	1854354..1855691	-	445	15641720	-	VC1716	-	condesin subunit F
1694	 48.40	0	1855703..1856485	-	260	15641721	-	VC1717	-	putative metallothionein SmtA
1695	 49.71	0	1856575..1857423	+	282	15641722	-	VC1718	-	hypothetical protein
1696	 47.80	0	1857523..1858227	-	234	15641723	-	VC1719	-	DNA-binding transcriptional regulator TorR
1697	 46.46	0	1858452..1859114	+	220	15641724	torD	VC1720	-	chaperone protein TorD
1698	 48.37	0	1859521..1860531	+	336	15641725	-	VC1721	-	LacI family transcription regulator
1699	 44.90	0	1860890..1861477	+	195	15641726	-	VC1722	-	hypothetical protein
1700	 47.25	0	1861832..1862521	+	229	15641727	-	VC1723	-	hypothetical protein
1701	 54.49	+1	1862555..1862866	+	103	15641728	-	VC1724	-	hypothetical protein
1702	 47.50	0	1862871..1863689	-	272	15641729	-	VC1725	-	beta-ketoadipate enol-lactone hydrolase, putative
1703	 48.80	0	1863877..1865331	-	484	15641730	glgA	VC1726	-	glycogen synthase
1704	 46.55	0	1865333..1866550	-	405	15641731	glgC	VC1727	-	glucose-1-phosphate adenylyltransferase
1705	 38.52	-2	1866682..1866816	+	44	15641732	-	VC1728	-	hypothetical protein
1706	 46.85	0	1866932..1867042	+	36	15641733	-	VC1729	-	hypothetical protein
1707	 50.32	0	1867219..1869849	-	876	15641734	-	VC1730	-	DNA topoisomerase I
1708	 38.15	-2	1870186..1870434	+	82	15641735	-	VC1731	-	hypothetical protein
1709	 50.66	0	1870525..1871805	-	426	15641736	-	VC1732	-	3-phosphoshikimate 1-carboxyvinyltransferase
1710	 43.14	-1	1871809..1872012	+	67	15641737	-	VC1733	-	hypothetical protein
1711	 42.86	-1	1871987..1872091	+	34	15641738	-	VC1734	-	hypothetical protein
1712	 50.55	0	1872072..1872803	+	243	15641739	aat	VC1735	-	leucyl/phenylalanyl-tRNA--protein transferase
1713	 46.30	0	1872807..1873508	+	233	15641740	-	VC1736	-	arginyl-tRNA-protein transferase
1714	 43.84	0	1873592..1873810	+	72	15641741	infA	VC1737	-	translation initiation factor IF-1
1715	 50.33	0	1874114..1875013	-	299	15641742	-	VC1738	-	hypothetical protein
1716	 49.16	0	1875028..1875324	-	98	15641743	-	VC1739	-	hypothetical protein
1717	 51.60	0	1875517..1877799	-	760	15641744	-	VC1740	-	acyl-CoA dehydrogenase
1718	 47.70	0	1877855..1878529	-	224	15641745	-	VC1741	-	TetR family transcriptional regulator
1719	 42.03	-1	1878784..1878921	+	45	15641746	-	VC1742	-	hypothetical protein
1720	 49.32	0	1878900..1879925	+	341	15641747	-	VC1743	-	hypothetical protein
1721	 48.58	0	1879970..1880251	+	93	15641748	-	VC1744	-	hypothetical protein
1722	 50.24	0	1880232..1881698	-	488	15641749	-	VC1745	-	succinate-semialdehyde dehydrogenase
1723	 47.78	0	1881716..1882345	-	209	15641750	-	VC1746	-	TetR family transcriptional regulator
1724	 39.56	-1	1882271..1882495	+	74	15641751	-	VC1747	-	hypothetical protein
1725	 46.91	0	1882572..1883396	+	274	15641752	-	VC1748	-	hypothetical protein
1726	 45.23	0	1883296..1884522	+	408	15641753	-	VC1749	-	hypothetical protein
1727	 44.12	0	1884533..1885654	+	373	15641754	-	VC1750	-	hypothetical protein
1728	 45.39	0	1885670..1886548	-	292	15641755	-	VC1751	-	hypothetical protein
1729	 42.86	-1	1887312..1887437	+	41	15641756	-	VC1752	-	hypothetical protein
1730	 45.21	0	1887601..1888905	+	434	15641757	-	VC1753	-	paraquat-inducible protein A
1731	 45.80	0	1888902..1890545	+	547	15641758	-	VC1754	-	paraquat-inducible protein B
1732	 48.70	0	1890542..1891120	+	192	15641759	-	VC1755	-	hypothetical protein
1733	 51.14	0	1891336..1892430	+	364	15641760	-	VC1756	-	periplasmic linker protein, putative
1734	 52.93	+1	1892430..1895480	+	1016	15641761	-	VC1757	-	AcrB/AcrD/AcrF family transporter
1735	 44.09	0	1896092..1897327	+	411	15641762	-	VC1758	-	phage family integrase
1736	 41.09	-1	1898009..1900831	-	940	15641763	-	VC1760	-	helicase, putative
1737	 40.23	-1	1900851..1901459	-	202	15641764	-	VC1761	-	hypothetical protein
1738	 40.63	-1	1901450..1902901	-	483	15641765	-	VC1762	-	hypothetical protein
1739	 40.14	-1	1902898..1903632	-	244	15641766	-	VC1763	-	chemotaxis protein MotB-related protein
1740	 41.30	-1	1903625..1905745	-	706	15641767	-	VC1764	-	hypothetical protein
1741	 43.34	0	1905790..1908858	-	1022	15641768	-	VC1765	-	type I restriction enzyme HsdR, putative
1742	 43.27	0	1908886..1910877	-	663	15641769	-	VC1766	-	hypothetical protein
1743	 44.94	0	1910870..1912282	-	470	15641770	-	VC1767	-	hypothetical protein
1744	 40.60	-1	1912283..1913671	-	462	15641771	-	VC1768	-	hypothetical protein
1745	 43.87	0	1913628..1916009	-	793	15641772	-	VC1769	-	DNA methylase HsdM, putative
1746	 41.72	-1	1916150..1918213	-	687	15641773	-	VC1770	-	hypothetical protein
1747	 41.85	-1	1918195..1921857	-	1220	15641774	-	VC1771	-	hypothetical protein
1748	 44.83	0	1921885..1922745	+	286	15641775	-	VC1772	-	hypothetical protein
1749	 36.13	-2	1922810..1923880	-	356	15641776	-	VC1773	-	hypothetical protein
1750	 41.65	-1	1923895..1925049	-	384	15641777	-	VC1774	-	hypothetical protein
1751	 43.61	0	1925231..1926067	-	278	15641778	-	VC1775	-	hypothetical protein
1752	 43.14	-1	1926196..1927092	-	298	15641779	-	VC1776	-	N-acetylneuraminate lyase, putative
1753	 45.33	0	1927130..1928413	-	427	15641780	-	VC1777	-	hypothetical protein
1754	 41.19	-1	1928421..1928942	-	173	15641781	-	VC1778	-	hypothetical protein
1755	 44.62	0	1928993..1929958	-	321	15641782	-	VC1779	-	C4-dicarboxylate-binding periplasmic protein
1756	 34.01	-2	1929989..1930282	+	97	15641783	-	VC1780	-	hypothetical protein
1757	 47.16	0	1930173..1930895	+	240	15641784	-	VC1781	-	N-acetylmannosamine-6-phosphate 2-epimerase
1758	 45.02	0	1930883..1931746	+	287	15641785	-	VC1782	-	N-acetylmannosamine kinase
1759	 44.94	0	1931750..1932886	+	378	15641786	-	VC1783	-	N-acetylglucosamine-6-phosphate deacetylase
1760	 45.17	0	1933231..1935654	+	807	15641787	-	VC1784	-	neuraminidase
1761	 44.44	0	1935801..1936007	-	68	15641788	-	VC1785	-	transcriptional regulator
1762	 48.85	0	1936121..1936597	+	158	15641789	-	VC1786	-	DNA repair protein RadC, putative
1763	 45.65	0	1936594..1936731	+	45	15641790	-	VC1787	-	hypothetical protein
1764	 43.10	-1	1936827..1937522	-	231	15641791	-	VC1788	-	hypothetical protein
1765	 44.44	0	1937519..1938391	-	290	15641792	-	VC1789	-	transposase OrfAB, subunit B
1766	 43.19	0	1938388..1938732	-	114	15641793	-	VC1790	-	transposase OrfAB, subunit A
1767	 44.00	0	1938739..1939779	-	346	15641794	-	VC1791	-	hypothetical protein
1768	 42.78	-1	1939914..1940273	-	119	15641795	-	VC1792	-	hypothetical protein
1769	 39.15	-1	1940322..1940699	-	125	15641796	-	VC1793	-	hypothetical protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.