IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.43   STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1541	 51.13	0	1671041..1673215	+	724	15641568	-	VC1560	-	catalase/peroxidase
1542	 43.12	-1	1673280..1674209	-	309	15641569	-	VC1561	-	LysR family transcriptional regulator
1543	 44.25	0	1674273..1675445	+	390	15641570	-	VC1562	-	beta-lactamase-related protein
1544	 47.39	0	1675595..1676611	+	338	15641571	-	VC1563	-	hypothetical protein
1545	 51.22	0	1676602..1676724	+	40	15641572	-	VC1564	-	hypothetical protein
1546	 49.05	0	1676745..1678004	+	419	15641573	-	VC1565	-	outer membrane protein TolC, putative
1547	 50.95	0	1678004..1679218	+	404	15641574	-	VC1566	-	hypothetical protein
1548	 50.70	0	1679222..1680499	+	425	15641575	-	VC1567	-	hypothetical protein
1549	 50.00	0	1680499..1681200	+	233	15641576	-	VC1568	-	ABC transporter, ATP-binding protein
1550	 50.00	0	1681166..1681267	+	33	15641577	-	VC1569	-	hypothetical protein
1551	 50.65	0	1681274..1682266	-	330	15641578	-	VC1570	-	quinol oxidase, subunit II
1552	 50.75	0	1682263..1683600	-	445	15641579	-	VC1571	-	quinol oxidase, subunit I
1553	 43.57	0	1684123..1684503	+	126	15641580	-	VC1572	-	hypothetical protein
1554	 51.44	0	1684519..1685904	+	461	15641581	fumC	VC1573	-	fumarate hydratase
1555	 44.79	0	1686049..1686432	-	127	15641582	-	VC1574	-	hypothetical protein
1556	 47.49	0	1686477..1686935	-	152	15641583	-	VC1575	-	hypothetical protein
1557	 44.34	0	1686965..1687282	-	105	15641584	-	VC1576	-	hypothetical protein
1558	 47.20	0	1687438..1688259	-	273	15641585	-	VC1577	-	hypothetical protein
1559	 35.86	-2	1688261..1688497	-	78	15641586	-	VC1578	-	hypothetical protein
1560	 45.72	0	1688481..1690151	-	556	15641587	-	VC1579	-	enterobactin synthetase component F-related protein
1561	 48.57	0	1690215..1691126	-	303	15641588	-	VC1580	-	LysR family transcriptional regulator
1562	 52.68	+1	1691206..1692756	+	516	15641589	-	VC1581	-	NADH dehydrogenase subunit L
1563	 54.07	+1	1692681..1695269	+	862	15641590	-	VC1582	-	hypothetical protein
1564	 50.78	0	1695314..1695829	-	171	15641591	-	VC1583	-	superoxide dismutase, Cu-Zn
1565	 46.56	0	1695869..1696435	-	188	15641592	-	VC1584	-	ankB protein
1566	 44.84	0	1696499..1698202	-	567	15641593	-	VC1585	-	catalase
1567	 38.24	-2	1698376..1698477	-	33	15641594	-	VC1586	-	hypothetical protein
1568	 39.68	-1	1698457..1698897	+	146	15641595	-	VC1587	-	hypothetical protein
1569	 48.07	0	1699073..1699954	-	293	15641596	-	VC1588	-	LysR family transcriptional regulator
1570	 48.85	0	1700060..1700845	+	261	15641597	-	VC1589	-	alpha-acetolactate decarboxylase
1571	 52.11	+1	1700984..1702687	+	567	15641598	-	VC1590	-	acetolactate synthase
1572	 52.17	+1	1702684..1703442	+	252	15641599	-	VC1591	-	short chain dehydrogenase/reductase family oxidoreductase
1573	 45.73	0	1703680..1704534	+	284	15641600	-	VC1592	-	hypothetical protein
1574	 42.79	-1	1704617..1705906	+	429	15641601	-	VC1593	-	GGDEF family protein
1575	 51.45	0	1705924..1706955	-	343	161582003	galM	VC1594	-	aldose 1-epimerase
1576	 51.97	+1	1706985..1708202	-	405	15641603	-	VC1595	-	galactokinase
1577	 49.20	0	1708211..1709275	-	354	161582002	-	VC1596	-	galactose-1-phosphate uridylyltransferase
1578	 49.02	0	1709719..1711152	-	477	15641605	-	VC1597	-	multidrug transporter, putative
1579	 45.58	0	1711301..1712125	+	274	15641606	-	VC1598	-	ABC transporter, periplasmic substrate-binding protein-related protein
1580	 42.66	-1	1712741..1713802	+	353	15641607	-	VC1599	-	GGDEF family protein
1581	 42.75	-1	1713805..1714494	-	229	15641608	-	VC1600	-	hypothetical protein
1582	 44.15	0	1714609..1715412	-	267	15641609	-	VC1601	-	hypothetical protein
1583	 45.19	0	1715544..1716530	-	328	15641610	-	VC1602	-	chemotaxis protein CheV
1584	 43.50	0	1716549..1717325	-	258	15641611	-	VC1603	-	hypothetical protein
1585	 49.20	0	1717391..1718077	-	228	15641612	-	VC1604	-	response regulator
1586	 48.55	0	1718077..1719693	-	538	15641613	-	VC1605	-	sensor kinase citA, putative
1587	 48.08	0	1720423..1721853	+	476	15641614	-	VC1606	-	hypothetical protein
1588	 51.38	0	1721865..1722839	+	324	15641615	-	VC1607	-	hypothetical protein
1589	 49.74	0	1722843..1724006	+	387	15641616	-	VC1608	-	hypothetical protein
1590	 49.14	0	1723925..1725151	+	408	15641617	-	VC1609	-	hypothetical protein
1591	 47.33	0	1725155..1725604	-	149	15641618	-	VC1610	-	hypothetical protein
1592	 48.75	0	1725652..1726611	+	319	15641619	-	VC1611	-	homoserine O-succinyltransferase
1593	 45.94	0	1726820..1727533	+	237	15641620	-	VC1612	-	fimbrial biogenesis and twitching motility protein, putative
1594	 44.00	0	1727537..1727761	-	74	15641621	-	VC1613	-	hypothetical protein
1595	 46.65	0	1727960..1729048	-	362	15641622	-	VC1614	-	putative SAM-dependent methyltransferase
1596	 43.66	0	1729045..1729557	-	170	15641623	-	VC1615	-	hypothetical protein
1597	 44.02	0	1729725..1729958	+	77	15641624	-	VC1616	-	glutaredoxin, putative
1598	 44.56	0	1729989..1730879	-	296	15641625	-	VC1617	-	LysR family transcriptional regulator
1599	 49.84	0	1730964..1732181	+	405	15641626	-	VC1618	-	multidrug resistance protein, putative
1600	 44.63	0	1732238..1732786	+	182	15641627	-	VC1619	-	hypothetical protein
1601	 46.26	0	1741764..1743101	+	445	15641628	-	VC1621	-	agglutination protein
1602	 46.64	0	1743103..1743741	+	212	15641629	-	VC1622	-	outer membrane protein, putative
1603	 45.79	0	1743877..1745040	-	387	15641630	-	VC1623	-	carboxynorspermidine decarboxylase
1604	 47.71	0	1745276..1746520	-	414	15641631	-	VC1624	-	hypothetical protein
1605	 47.52	0	1750016..1751164	-	382	15641632	nhaA	VC1627	-	pH-dependent sodium/proton antiporter
1606	 49.15	0	1751443..1752561	-	372	15641633	-	VC1628	-	hypothetical protein
1607	 48.39	0	1752562..1755072	-	836	15641634	-	VC1629	-	hypothetical protein
1608	 49.85	0	1754996..1755679	-	227	15641635	-	VC1630	-	ABC transporter, ATP-binding protein
1609	 50.47	0	1755793..1757169	-	458	15641636	-	VC1631	-	hypothetical protein
1610	 51.01	0	1757297..1758733	+	478	15641637	-	VC1632	-	hypothetical protein
1611	 46.07	0	1758800..1759537	-	245	15641638	-	VC1633	-	hypothetical protein
1612	 51.58	0	1759459..1760664	-	401	15641639	-	VC1634	-	bicyclomycin/multidrug efflux system
1613	 47.99	0	1760983..1761678	-	231	15641640	-	VC1635	-	ribosomal small subunit pseudouridine synthase A
1614	 51.32	0	1761623..1763596	+	657	15641641	-	VC1636	-	helicase-related protein
1615	 46.81	0	1763861..1764268	+	135	15641642	-	VC1637	-	hypothetical protein
1616	 49.09	0	1764280..1764939	+	219	15641643	-	VC1638	-	DNA-binding response regulator
1617	 49.39	0	1764914..1766302	+	462	15641644	-	VC1639	-	sensor histidine kinase
1618	 48.03	0	1766460..1766738	+	92	15641645	-	VC1640	-	50S ribosomal protein L25
1619	 38.50	-2	1766888..1767661	-	257	15641646	-	VC1641	-	hypothetical protein
1620	 48.01	0	1767753..1768154	-	133	15641647	-	VC1642	-	hypothetical protein
1621	 47.29	0	1768345..1770135	+	596	15641648	-	VC1643	-	methyl-accepting chemotaxis protein
1622	 47.71	0	1770467..1771711	+	414	15641649	-	VC1644	-	hypothetical protein
1623	 46.03	0	1771809..1772438	-	209	15641650	-	VC1645	-	hypothetical protein
1624	 46.08	0	1772606..1772809	-	67	15641651	-	VC1646	-	hypothetical protein
1625	 48.43	0	1772850..1774763	+	637	15641652	-	VC1647	-	hypothetical protein
1626	 50.00	0	1774727..1774822	+	31	15641653	-	VC1648	-	hypothetical protein
1627	 42.50	-1	1774844..1776490	-	548	15641654	-	VC1649	-	trypsin, putative
1628	 48.03	0	1776818..1779274	+	818	15641655	-	VC1650	-	collagenase
1629	 44.95	0	1779308..1780969	-	553	15641656	-	VC1651	-	response regulator VieB
1630	 46.89	0	1780981..1782735	-	584	15641657	-	VC1652	-	response regulator VieA
1631	 43.82	0	1782740..1786180	-	1146	15641658	-	VC1653	-	sensory box sensor histidine kinase/response regulator VieS
1632	 42.34	-1	1786522..1786632	+	36	15641659	-	VC1654	-	hypothetical protein
1633	 49.93	0	1786971..1788326	+	451	15641660	-	VC1655	-	magnesium transporter
1634	 48.73	0	1788409..1789272	-	287	15641661	-	VC1656	-	hypothetical protein
1635	 40.43	-1	1789284..1789424	+	46	15641662	-	VC1657	-	hypothetical protein
1636	 47.85	0	1789608..1790861	+	417	15641663	-	VC1658	-	serine transporter
1637	 52.00	+1	1791030..1791977	+	315	15641664	-	VC1659	-	hypothetical protein
1638	 44.59	0	1794166..1794387	+	73	15641665	-	VC1661	-	hypothetical protein
1639	 48.69	0	1794393..1794659	-	88	15641666	-	VC1662	-	hypothetical protein
1640	 47.07	0	1794806..1795249	+	147	15641667	-	VC1663	-	heat shock protein HslJ
47.43	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.