IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1486	 47.76	0	1618209..1618700	+	163	15641513	-	VC1504	-	hypothetical protein
1487	 45.88	0	1618697..1619557	+	286	15641514	-	VC1505	-	hypothetical protein
1488	 47.80	0	1619550..1620026	-	158	15641515	-	VC1506	-	hypothetical protein
1489	 48.06	0	1620176..1621363	+	395	15641516	-	VC1507	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1490	 47.00	0	1621375..1621857	+	160	15641517	-	VC1508	-	nucleotide-binding protein
1491	 50.77	0	1621992..1622771	-	259	15641518	-	VC1509	-	NAD-dependent deacetylase
1492	 47.99	0	1622869..1623291	-	140	15641519	-	VC1510	-	hypothetical protein
1493	 49.53	0	1623278..1624351	-	357	15641520	-	VC1511	-	formate dehydrogenase, cytochrome B556 subunit
1494	 53.04	+1	1624352..1624960	-	202	15641521	-	VC1512	-	formate dehydrogenase, iron-sulfur subunit
1495	 48.99	0	1627838..1628035	-	65	15641522	-	VC1514	-	hypothetical protein
1496	 50.23	0	1628113..1628769	-	218	15641523	-	VC1515	-	chaperone, formate dehydrogenase-specific, putative
1497	 50.30	0	1628795..1630456	-	553	15641524	-	VC1516	-	iron-sulfur cluster-binding protein
1498	 48.65	0	1630655..1631320	-	221	15641525	-	VC1517	-	hypothetical protein
1499	 53.25	+1	1631247..1631723	-	158	15641526	-	VC1518	-	hypothetical protein
1500	 48.92	0	1631768..1632781	+	337	15641527	-	VC1519	-	formate dehydrogenase accessory protein
1501	 48.84	0	1632888..1634480	-	530	15641528	-	VC1520	-	ABC transporter, ATP-binding protein
1502	 47.64	0	1634692..1636725	-	677	15641529	-	VC1521	-	sensor histidine kinase
1503	 50.79	0	1636715..1638169	-	484	15641530	-	VC1522	-	sigma-54 dependent response regulator
1504	 46.62	0	1638461..1639288	+	275	15641531	-	VC1523	-	hypothetical protein
1505	 51.65	0	1639295..1639993	+	232	15641532	-	VC1524	-	ABC transporter, permease protein
1506	 48.96	0	1640002..1640724	+	240	15641533	-	VC1525	-	ABC transporter, ATP-binding protein
1507	 48.69	0	1640678..1641289	+	203	15641534	mobA	VC1526	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1508	 50.36	0	1641286..1643106	+	606	15641535	-	VC1527	-	molybdopterin biosynthesis MoeA protein
1509	 39.90	-1	1643196..1643576	-	126	15641536	-	VC1528	-	hypothetical protein
1510	 39.91	-1	1643549..1643974	-	141	15641537	-	VC1529	-	hypothetical protein
1511	 38.89	-2	1643985..1644146	-	53	15641538	-	VC1530	-	hypothetical protein
1512	 42.39	-1	1644190..1644465	+	91	15641539	-	VC1531	-	hypothetical protein
1513	 49.72	0	1644672..1645580	-	302	15641540	-	VC1532	-	N-acetyl-D-glucosamine kinase
1514	 47.29	0	1645743..1646480	-	245	15641541	-	VC1533	-	hypothetical protein
1515	 48.42	0	1646457..1647371	+	304	15641542	-	VC1534	-	hypothetical protein
1516	 48.71	0	1647373..1648965	-	530	15641543	-	VC1535	-	methyl-accepting chemotaxis protein
1517	 43.61	0	1648958..1649395	-	145	15641544	-	VC1536	-	hypothetical protein
1518	 46.11	0	1649484..1649984	+	166	15641545	-	VC1537	-	lipoprotein NlpC
1519	 43.29	0	1649994..1650425	-	143	15641546	-	VC1538	-	hypothetical protein
1520	 44.87	0	1650858..1651724	+	288	15641547	-	VC1539	-	hypothetical protein
1521	 49.13	0	1652340..1653713	+	457	161582004	-	VC1540	-	multidrug efflux protein
1522	 47.76	0	1653917..1654900	+	327	15641549	-	VC1541	-	hypothetical protein
1523	 49.82	0	1654907..1655755	-	282	15641550	-	VC1542	-	DNA ligase
1524	 48.35	0	1656062..1657240	-	392	15641551	-	VC1543	-	hypothetical protein
1525	 52.01	+1	1657237..1657857	-	206	15641552	-	VC1544	-	tonB2 protein
1526	 50.12	0	1657857..1658261	-	134	15641553	-	VC1545	-	TonB system transport protein ExbD2
1527	 49.72	0	1658258..1658800	-	180	15641554	-	VC1546	-	TonB system transport protein ExbB2
1528	 50.87	0	1658807..1660180	-	457	15641555	-	VC1547	-	biopolymer transport protein ExbB-related protein
1529	 48.48	0	1660180..1660938	-	252	15641556	-	VC1548	-	hypothetical protein
1530	 48.35	0	1661257..1662561	+	434	15641557	-	VC1549	-	glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein
1531	 51.02	0	1662637..1663518	+	293	15641558	-	VC1550	-	glycerol-3-phosphate ABC transporter, permease protein
1532	 46.50	0	1663528..1664370	+	280	15641559	-	VC1551	-	glycerol-3-phosphate ABC transporter, permease protein
1533	 49.75	0	1664360..1665541	+	393	15641560	-	VC1552	-	glycerol-3-phosphate transporter ATP-binding subunit
1534	 48.82	0	1665566..1666327	+	253	15641561	-	VC1553	-	glycerol-3-phosphate regulon repressor
1535	 47.90	0	1666355..1667068	+	237	15641562	-	VC1554	-	glycerophosphoryl diester phosphodiesterase, putative
1536	 51.27	0	1667144..1667656	-	170	15641563	-	VC1555	-	hypothetical protein
1537	 52.07	+1	1667625..1667987	-	120	15641564	-	VC1556	-	hypothetical protein
1538	 48.50	0	1668122..1669156	-	344	15641565	-	VC1557	-	LacI family transcription regulator
1539	 47.32	0	1669192..1670628	-	478	15641566	-	VC1558	-	6-phospho-beta-glucosidase
1540	 48.04	0	1670919..1671020	+	33	15641567	-	VC1559	-	hypothetical protein
1541	 51.13	0	1671041..1673215	+	724	15641568	-	VC1560	-	catalase/peroxidase
1542	 43.12	-1	1673280..1674209	-	309	15641569	-	VC1561	-	LysR family transcriptional regulator
1543	 44.25	0	1674273..1675445	+	390	15641570	-	VC1562	-	beta-lactamase-related protein
1544	 47.39	0	1675595..1676611	+	338	15641571	-	VC1563	-	hypothetical protein
1545	 51.22	0	1676602..1676724	+	40	15641572	-	VC1564	-	hypothetical protein
1546	 49.05	0	1676745..1678004	+	419	15641573	-	VC1565	-	outer membrane protein TolC, putative
1547	 50.95	0	1678004..1679218	+	404	15641574	-	VC1566	-	hypothetical protein
1548	 50.70	0	1679222..1680499	+	425	15641575	-	VC1567	-	hypothetical protein
1549	 50.00	0	1680499..1681200	+	233	15641576	-	VC1568	-	ABC transporter, ATP-binding protein
1550	 50.00	0	1681166..1681267	+	33	15641577	-	VC1569	-	hypothetical protein
1551	 50.65	0	1681274..1682266	-	330	15641578	-	VC1570	-	quinol oxidase, subunit II
1552	 50.75	0	1682263..1683600	-	445	15641579	-	VC1571	-	quinol oxidase, subunit I
1553	 43.57	0	1684123..1684503	+	126	15641580	-	VC1572	-	hypothetical protein
1554	 51.44	0	1684519..1685904	+	461	15641581	fumC	VC1573	-	fumarate hydratase
1555	 44.79	0	1686049..1686432	-	127	15641582	-	VC1574	-	hypothetical protein
1556	 47.49	0	1686477..1686935	-	152	15641583	-	VC1575	-	hypothetical protein
1557	 44.34	0	1686965..1687282	-	105	15641584	-	VC1576	-	hypothetical protein
1558	 47.20	0	1687438..1688259	-	273	15641585	-	VC1577	-	hypothetical protein
1559	 35.86	-2	1688261..1688497	-	78	15641586	-	VC1578	-	hypothetical protein
1560	 45.72	0	1688481..1690151	-	556	15641587	-	VC1579	-	enterobactin synthetase component F-related protein
1561	 48.57	0	1690215..1691126	-	303	15641588	-	VC1580	-	LysR family transcriptional regulator
1562	 52.68	+1	1691206..1692756	+	516	15641589	-	VC1581	-	NADH dehydrogenase subunit L
1563	 54.07	+1	1692681..1695269	+	862	15641590	-	VC1582	-	hypothetical protein
1564	 50.78	0	1695314..1695829	-	171	15641591	-	VC1583	-	superoxide dismutase, Cu-Zn
1565	 46.56	0	1695869..1696435	-	188	15641592	-	VC1584	-	ankB protein
1566	 44.84	0	1696499..1698202	-	567	15641593	-	VC1585	-	catalase
1567	 38.24	-2	1698376..1698477	-	33	15641594	-	VC1586	-	hypothetical protein
1568	 39.68	-1	1698457..1698897	+	146	15641595	-	VC1587	-	hypothetical protein
1569	 48.07	0	1699073..1699954	-	293	15641596	-	VC1588	-	LysR family transcriptional regulator
1570	 48.85	0	1700060..1700845	+	261	15641597	-	VC1589	-	alpha-acetolactate decarboxylase
1571	 52.11	+1	1700984..1702687	+	567	15641598	-	VC1590	-	acetolactate synthase
1572	 52.17	+1	1702684..1703442	+	252	15641599	-	VC1591	-	short chain dehydrogenase/reductase family oxidoreductase
1573	 45.73	0	1703680..1704534	+	284	15641600	-	VC1592	-	hypothetical protein
1574	 42.79	-1	1704617..1705906	+	429	15641601	-	VC1593	-	GGDEF family protein
1575	 51.45	0	1705924..1706955	-	343	161582003	galM	VC1594	-	aldose 1-epimerase
1576	 51.97	+1	1706985..1708202	-	405	15641603	-	VC1595	-	galactokinase
1577	 49.20	0	1708211..1709275	-	354	161582002	-	VC1596	-	galactose-1-phosphate uridylyltransferase
1578	 49.02	0	1709719..1711152	-	477	15641605	-	VC1597	-	multidrug transporter, putative
1579	 45.58	0	1711301..1712125	+	274	15641606	-	VC1598	-	ABC transporter, periplasmic substrate-binding protein-related protein
1580	 42.66	-1	1712741..1713802	+	353	15641607	-	VC1599	-	GGDEF family protein
1581	 42.75	-1	1713805..1714494	-	229	15641608	-	VC1600	-	hypothetical protein
1582	 44.15	0	1714609..1715412	-	267	15641609	-	VC1601	-	hypothetical protein
1583	 45.19	0	1715544..1716530	-	328	15641610	-	VC1602	-	chemotaxis protein CheV
1584	 43.50	0	1716549..1717325	-	258	15641611	-	VC1603	-	hypothetical protein
1585	 49.20	0	1717391..1718077	-	228	15641612	-	VC1604	-	response regulator
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.