IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.43   STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1418	 43.29	0	1531716..1532468	-	250	15641445	-	VC1434	-	fumarate/nitrate reduction transcriptional regulator
1419	 49.78	0	1532558..1533232	-	224	15641446	-	VC1435	-	hypothetical protein
1420	 41.82	-1	1533229..1533393	-	54	15641447	-	VC1436	-	FixS-related protein
1421	 46.78	0	1533397..1535769	-	790	15641448	-	VC1437	-	cation transporter E1-E2 family ATPase
1422	 42.98	-1	1535774..1536250	-	158	15641449	-	VC1438	-	hypothetical protein
1423	 46.18	0	1536329..1537309	-	326	15641450	-	VC1439	-	cytochrome c oxidase, subunit CcoP
1424	 43.03	-1	1537317..1537481	-	54	15641451	-	VC1440	-	cytochrome c oxidase, subunit CcoQ
1425	 44.61	0	1537493..1538113	-	206	15641452	-	VC1441	-	cytochrome c oxidase, subunit CcoO
1426	 47.63	0	1538127..1539560	-	477	15641453	-	VC1442	-	cytochrome c oxidase, subunit CcoN
1427	 46.98	0	1539789..1540169	+	126	15641454	-	VC1443	-	hypothetical protein
1428	 43.10	-1	1540238..1541455	+	405	15641455	-	VC1444	-	hypothetical protein
1429	 38.92	-1	1541452..1543170	+	572	15641456	-	VC1445	-	sensor histidine kinase/response regulator
1430	 49.58	0	1543231..1545396	-	721	15641457	-	VC1446	-	toxin secretion transporter, putative
1431	 50.43	0	1545399..1546802	-	467	15641458	-	VC1447	-	RTX toxin transporter
1432	 45.08	0	1546757..1548919	-	720	15641459	-	VC1448	-	RTX toxin transporter
1433	 41.67	-1	1549277..1549636	+	119	15641460	-	VC1449	-	hypothetical protein
1434	 49.13	0	1549662..1550123	+	153	15641461	-	VC1450	-	RTX toxin activating protein
1435	 48.67	0	1550108..1563784	+	4558	15641462	-	VC1451	-	RTX toxin RtxA
1436	 37.33	-2	1564152..1564376	-	74	15641463	-	VC1452	-	RstC protein
1437	 45.33	0	1564470..1564844	-	124	15641464	-	VC1453	-	RstB1 protein
1438	 45.56	0	1564822..1565901	-	359	15641465	-	VC1454	-	RstA1 protein
1439	 37.76	-2	1566027..1566365	+	112	15641466	-	VC1455	-	transcriptional repressor RstR
1440	 32.53	-2	1566967..1567341	-	124	15641467	-	VC1456	-	cholera enterotoxin, B subunit
1441	 38.48	-2	1567338..1568114	-	258	15641468	-	VC1457	-	cholera enterotoxin, A subunit
1442	 49.17	0	1568213..1569412	-	399	15641469	-	VC1458	-	zona occludens toxin
1443	 44.56	0	1569409..1569702	-	97	15641470	-	VC1459	-	accessory cholera enterotoxin
1444	 48.68	0	1569699..1570982	-	427	15641471	-	VC1460	-	hypothetical protein
1445	 47.39	0	1570993..1571241	-	82	15641472	-	VC1461	-	colonization factor
1446	 44.79	0	1571377..1571760	-	127	15641473	-	VC1462	-	RstB2 protein
1447	 45.65	0	1571738..1572817	-	359	15641474	-	VC1463	-	RstA2 protein
1448	 37.76	-2	1572943..1573281	+	112	15641475	-	VC1464	-	transcriptional repressor RstR
1449	 48.21	0	1573771..1574355	-	194	15641476	-	VC1465	-	hypothetical protein
1450	 46.43	0	1574348..1574515	-	55	15641477	-	VC1466	-	hypothetical protein
1451	 50.36	0	1574593..1575285	-	230	15641478	-	VC1467	-	hypothetical protein
1452	 46.67	0	1575415..1575699	-	94	15641479	-	VC1468	-	hypothetical protein
1453	 48.88	0	1575704..1577272	-	522	15641480	-	VC1469	-	phage replication protein Cri
1454	 38.10	-2	1579039..1579206	-	55	15641481	-	VC1471	-	hypothetical protein
1455	 46.43	0	1579199..1579366	-	55	15641482	-	VC1472	-	hypothetical protein
1456	 50.36	0	1579444..1580136	-	230	15641483	-	VC1473	-	hypothetical protein
1457	 46.67	0	1580266..1580550	-	94	15641484	-	VC1474	-	hypothetical protein
1458	 48.88	0	1580555..1582123	-	522	15641485	-	VC1475	-	phage replication protein Cri
1459	 42.94	-1	1583160..1583513	+	117	15641486	-	VC1477	-	transposase OrfAB, subunit A
1460	 44.44	0	1583510..1584382	+	290	15641487	-	VC1478	-	transposase OrfAB, subunit B
1461	 37.22	-2	1585291..1585650	-	119	15641488	-	VC1479	-	hypothetical protein
1462	 43.54	0	1585761..1586093	-	110	15641489	-	VC1480	-	hypothetical protein
1463	 40.20	-1	1586098..1586607	-	169	15641490	-	VC1481	-	hypothetical protein
1464	 43.74	0	1586564..1588360	+	598	15641491	-	VC1482	-	ATP-dependent protease LA-related protein
1465	 44.51	0	1588425..1588943	+	172	15641492	-	VC1483	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
1466	 45.40	0	1589026..1589199	-	57	15641493	-	VC1484	-	ribosome modulation factor
1467	 45.72	0	1589366..1591060	-	564	15641494	-	VC1485	-	hypothetical protein
1468	 44.95	0	1591066..1592985	-	639	15641495	-	VC1486	-	ABC transporter ATPase component
1469	 41.15	-1	1592963..1593205	-	80	15641496	-	VC1487	-	hypothetical protein
1470	 46.26	0	1593214..1595340	-	708	15641497	-	VC1488	-	23S rRNA m(2)G2445 methyltransferase
1471	 34.09	-2	1595599..1595730	-	43	15641498	-	VC1489	-	hypothetical protein
1472	 44.75	0	1595800..1596342	-	180	15641499	-	VC1490	-	hypothetical protein
1473	 45.40	0	1596497..1597507	-	336	15641500	-	VC1491	-	dihydroorotate dehydrogenase 2
1474	 46.80	0	1597581..1602422	-	1613	15641501	-	VC1492	-	hypothetical protein
1475	 38.82	-2	1602611..1602847	-	78	15641502	-	VC1493	-	hypothetical protein
1476	 47.76	0	1602881..1605487	-	868	15641503	-	VC1494	-	aminopeptidase N
1477	 43.38	0	1605686..1606402	-	238	15641504	-	VC1495	-	hypothetical protein
1478	 44.24	0	1606511..1608508	-	665	15641505	-	VC1496	-	carboxy-terminal protease
1479	 46.89	0	1608526..1609152	-	208	15641506	-	VC1497	-	putative solute/DNA competence effector
1480	 43.70	0	1609253..1609831	-	192	15641507	-	VC1498	-	hypothetical protein
1481	 46.48	0	1609776..1611608	+	610	15641508	-	VC1499	-	ABC transporter, ATP-binding protein
1482	 48.17	0	1611642..1612901	+	419	15641509	-	VC1500	-	PqiA family protein
1483	 49.05	0	1612911..1615550	+	879	15641510	-	VC1501	-	hypothetical protein
1484	 48.74	0	1615581..1617092	+	503	15641511	yebU	VC1502	-	rRNA (cytosine-C(5)-)-methyltransferase RsmF
1485	 43.92	0	1617274..1618170	-	298	15641512	-	VC1503	-	hypothetical protein
1486	 47.76	0	1618209..1618700	+	163	15641513	-	VC1504	-	hypothetical protein
1487	 45.88	0	1618697..1619557	+	286	15641514	-	VC1505	-	hypothetical protein
1488	 47.80	0	1619550..1620026	-	158	15641515	-	VC1506	-	hypothetical protein
1489	 48.06	0	1620176..1621363	+	395	15641516	-	VC1507	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1490	 47.00	0	1621375..1621857	+	160	15641517	-	VC1508	-	nucleotide-binding protein
1491	 50.77	0	1621992..1622771	-	259	15641518	-	VC1509	-	NAD-dependent deacetylase
1492	 47.99	0	1622869..1623291	-	140	15641519	-	VC1510	-	hypothetical protein
1493	 49.53	0	1623278..1624351	-	357	15641520	-	VC1511	-	formate dehydrogenase, cytochrome B556 subunit
1494	 53.04	+1	1624352..1624960	-	202	15641521	-	VC1512	-	formate dehydrogenase, iron-sulfur subunit
1495	 48.99	0	1627838..1628035	-	65	15641522	-	VC1514	-	hypothetical protein
1496	 50.23	0	1628113..1628769	-	218	15641523	-	VC1515	-	chaperone, formate dehydrogenase-specific, putative
1497	 50.30	0	1628795..1630456	-	553	15641524	-	VC1516	-	iron-sulfur cluster-binding protein
1498	 48.65	0	1630655..1631320	-	221	15641525	-	VC1517	-	hypothetical protein
1499	 53.25	+1	1631247..1631723	-	158	15641526	-	VC1518	-	hypothetical protein
1500	 48.92	0	1631768..1632781	+	337	15641527	-	VC1519	-	formate dehydrogenase accessory protein
1501	 48.84	0	1632888..1634480	-	530	15641528	-	VC1520	-	ABC transporter, ATP-binding protein
1502	 47.64	0	1634692..1636725	-	677	15641529	-	VC1521	-	sensor histidine kinase
1503	 50.79	0	1636715..1638169	-	484	15641530	-	VC1522	-	sigma-54 dependent response regulator
1504	 46.62	0	1638461..1639288	+	275	15641531	-	VC1523	-	hypothetical protein
1505	 51.65	0	1639295..1639993	+	232	15641532	-	VC1524	-	ABC transporter, permease protein
1506	 48.96	0	1640002..1640724	+	240	15641533	-	VC1525	-	ABC transporter, ATP-binding protein
1507	 48.69	0	1640678..1641289	+	203	15641534	mobA	VC1526	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1508	 50.36	0	1641286..1643106	+	606	15641535	-	VC1527	-	molybdopterin biosynthesis MoeA protein
1509	 39.90	-1	1643196..1643576	-	126	15641536	-	VC1528	-	hypothetical protein
1510	 39.91	-1	1643549..1643974	-	141	15641537	-	VC1529	-	hypothetical protein
1511	 38.89	-2	1643985..1644146	-	53	15641538	-	VC1530	-	hypothetical protein
1512	 42.39	-1	1644190..1644465	+	91	15641539	-	VC1531	-	hypothetical protein
1513	 49.72	0	1644672..1645580	-	302	15641540	-	VC1532	-	N-acetyl-D-glucosamine kinase
1514	 47.29	0	1645743..1646480	-	245	15641541	-	VC1533	-	hypothetical protein
1515	 48.42	0	1646457..1647371	+	304	15641542	-	VC1534	-	hypothetical protein
1516	 48.71	0	1647373..1648965	-	530	15641543	-	VC1535	-	methyl-accepting chemotaxis protein
1517	 43.61	0	1648958..1649395	-	145	15641544	-	VC1536	-	hypothetical protein
47.43	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.