IslandPath Analysis: Thermoplasma volcanium GSS1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.87   STD DEV: 3.44
Thermoplasma volcanium GSS1, complete genome - 1..1584804
1499 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1303	 39.79	0	1368057..1369187	-	376	13542134	-	TVN1303	-	RNA helicase
1304	 46.10	+1	1369451..1370641	+	396	13542135	-	TVN1304	-	acetyl-CoA acetyltransferase
1305	 41.98	0	1370643..1371752	+	369	13542136	-	TVN1305	-	Acyl-CoA dehydrogenase
1306	 42.56	0	1371752..1372228	+	158	13542137	-	TVN1306	-	Acyl-CoA dehydrogenase
1307	 43.73	0	1372249..1372758	+	169	13542138	-	TVN1307	-	Acyl-CoA dehydrogenase
1308	 42.79	0	1373162..1373563	-	133	13542139	-	TVN1308	-	hypothetical protein
1309	 42.89	0	1373719..1375308	+	529	13542140	-	TVN1309	-	acyl-CoA synthetase
1310	 43.74	0	1375310..1377289	-	659	13542141	-	TVN1310	-	3-hydroxyacyl-CoA dehydrogenase
1311	 36.09	-1	1377296..1377622	-	108	13542142	-	TVN1311	-	sterol carrier protein
1312	 40.68	0	1377730..1378260	-	176	13542143	-	TVN1312	-	CBS domain-containing protein
1313	 45.74	+1	1378444..1380120	+	558	13542144	-	TVN1313	-	Fe-S oxidoreductase
1314	 42.79	0	1380154..1381158	+	334	13542145	-	TVN1314	-	oxidoreductase
1315	 42.67	0	1381191..1383032	-	613	13542146	-	TVN1315	-	hypothetical protein
1316	 41.55	0	1383228..1384310	+	360	13542147	aroB	TVN1316	-	3-dehydroquinate synthase
1317	 39.55	0	1384297..1385100	+	267	13542148	aroE	TVN1317	-	shikimate 5-dehydrogenase
1318	 42.87	0	1385087..1385893	+	268	13542149	-	TVN1318	-	shikimate kinase
1319	 41.61	0	1385883..1387115	+	410	13542150	-	TVN1319	-	3-phosphoshikimate 1-carboxyvinyltransferase
1320	 39.80	0	1387144..1388781	+	545	13542151	argS	TVN1320	-	arginyl-tRNA synthetase
1321	 39.69	0	1388786..1391662	-	958	13542152	-	TVN1321	-	hypothetical protein
1322	 44.11	0	1391663..1393063	-	466	13542153	-	TVN1322	-	hypothetical protein
1323	 37.35	-1	1393485..1393808	+	107	13542154	-	TVN1323	-	hypothetical protein
1324	 40.64	0	1393839..1394372	+	177	13542155	-	TVN1324	-	acetyltransferase
1325	 36.90	-1	1394373..1394708	-	111	13542156	-	TVN1325	-	hypothetical protein
1326	 39.38	0	1395016..1395957	+	313	13542157	-	TVN1326	-	Fe-S oxidoreductase
1327	 34.52	-1	1395987..1396322	-	111	13542158	-	TVN1327	-	hypothetical protein
1328	 41.70	0	1396300..1397733	-	477	13542159	-	TVN1328	-	ABC-type peptide transporter, ATPase component
1329	 38.88	0	1397733..1399301	-	522	13542160	-	TVN1329	-	ABC-type peptide transport system, ATPase component
1330	 40.83	0	1399304..1400263	-	319	13542161	-	TVN1330	-	ABC-type peptide transporter, permease component
1331	 41.85	0	1400273..1401364	-	363	13542162	-	TVN1331	-	ABC-type peptide transport system, permease component
1332	 42.42	0	1401500..1404382	-	960	13542163	-	TVN1332	-	ABC-type peptide transport system, solute-binding component
1333	 35.96	-1	1404760..1405254	+	164	13542164	-	TVN1333	-	hypothetical protein
1334	 43.16	0	1405258..1406112	-	284	13542165	-	TVN1334	-	2-oxoacid ferredoxin oxidoreductase subunit beta
1335	 42.21	0	1406112..1407869	-	585	13542166	-	TVN1335	-	2-oxoacid--ferredoxin oxidoreductase, alpha subunit
1336	 41.27	0	1408056..1409429	+	457	13542167	aspA	TVN1336	-	aspartate ammonia-lyase
1337	 38.58	0	1409444..1409977	-	177	13542168	-	TVN1337	-	transcription regulator
1338	 40.13	0	1410138..1411343	+	401	13542169	-	TVN1338	-	2-methylthioadenine synthetase
1339	 41.35	0	1411317..1412327	-	336	13542170	-	TVN1339	-	diphthamide synthase subunit DPH2
1340	 35.65	-1	1412448..1413137	-	229	13542171	-	TVN1340	-	hypothetical protein
1341	 40.16	0	1413232..1413744	-	170	13542172	-	TVN1341	-	hypothetical protein
1342	 42.27	0	1413828..1415270	-	480	13542173	-	TVN1342	-	sugar transport permease
1343	 40.05	0	1415417..1416517	-	366	13542174	-	TVN1343	-	Acyl-CoA dehydrogenase
1344	 40.62	0	1416654..1417421	+	255	13542175	fabG	TVN1344	-	3-ketoacyl-(acyl-carrier-protein) reductase
1345	 41.07	0	1417485..1418453	+	322	13542176	-	TVN1345	-	dehydrogenase
1346	 41.07	0	1418445..1419530	-	361	13542177	-	TVN1346	-	N-acylamino acid racemase
1347	 42.86	0	1419648..1419878	+	76	13542178	-	TVN1347	-	transcription regulator
1348	 43.53	0	1420005..1420367	+	120	13542179	-	TVN1348	-	hypothetical protein
1349	 40.78	0	1420446..1420982	+	178	13542180	-	TVN1349	-	chorismate mutase
1350	 39.56	0	1420979..1421572	+	197	13542181	-	TVN1350	-	prephenate dehydrogenase
1351	 41.64	0	1421569..1422507	+	312	13542182	-	TVN1351	-	3-deoxy-7-phosphoheptulonate synthase
1352	 40.93	0	1422495..1423547	-	350	13542183	-	TVN1352	-	pyruvate-formate lyase-activating enzyme
1353	 43.82	0	1423778..1425265	+	495	13542184	hutH	TVN1353	-	histidine ammonia-lyase
1354	 40.58	0	1425262..1425606	-	114	13542185	-	TVN1354	-	hypothetical protein
1355	 38.44	0	1425726..1427135	-	469	13542186	-	TVN1355	-	amino acid transporter
1356	 45.25	+1	1427251..1428912	+	553	13542187	-	TVN1356	-	urocanate hydratase
1357	 40.58	0	1428909..1430123	+	404	13542188	-	TVN1357	-	imidazolonepropionase
1358	 39.75	0	1430252..1431061	-	269	13542189	-	TVN1358	-	hypothetical protein
1359	 44.06	0	1431058..1431663	-	201	13542190	-	TVN1359	-	hypothetical protein
1360	 43.89	0	1431896..1433041	+	381	13542191	-	TVN1360	-	metal-dependent amidohydrolase
1361	 43.19	0	1433046..1433978	+	310	13542192	-	TVN1361	-	microcin C7 resistance protein MccF-like protein
1362	 37.04	-1	1433995..1434210	-	71	13542193	-	TVN1362	-	hypothetical protein
1363	 41.77	0	1434253..1434738	-	161	13542194	-	TVN1363	-	major facilitator superfamily permease
1364	 41.00	0	1434889..1435605	-	238	13542195	-	TVN1364	-	sugar transport permease
1365	 39.69	0	1435680..1436858	-	392	13542196	-	TVN1365	-	major facilitator superfamily permease
1366	 44.91	+1	1437000..1438442	+	480	13542197	-	TVN1366	-	multidrug efflux permease
1367	 41.61	0	1438477..1439394	+	305	13542198	-	TVN1367	-	ABC-type multidrug transport system, ATPase component
1368	 42.09	0	1439391..1440155	+	254	13542199	-	TVN1368	-	ABC transporter permease
1369	 42.02	0	1440158..1440802	+	214	13542200	-	TVN1369	-	phosphoribosyltransferase
1370	 40.32	0	1441065..1441436	+	123	13542201	-	TVN1370	-	hypothetical protein
1371	 39.47	0	1441923..1442264	+	113	13542202	-	TVN1371	-	hypothetical protein
1372	 42.44	0	1442259..1443653	-	464	13542203	-	TVN1372	-	DNA polymerase II small subunit
1373	 43.24	0	1443757..1444614	+	285	13542204	-	TVN1373	-	DMT family permease
1374	 40.32	0	1444617..1445804	-	395	13542205	-	TVN1374	-	NAD-dependent aldehyde dehydrogenase
1375	 47.67	+1	1445839..1447296	-	485	13542206	-	TVN1375	-	inositol-5-monophosphate dehydrogenase
1376	 41.33	0	1447366..1448115	-	249	13542207	-	TVN1376	-	solute-binding protein
1377	 42.26	0	1448112..1449209	-	365	13542208	-	TVN1377	-	hypothetical protein
1378	 43.14	0	1449429..1451111	+	560	13542209	-	TVN1378	-	Fe-S oxidoreductase
1379	 43.78	0	1451146..1452246	+	366	13542210	-	TVN1379	-	hypothetical protein
1380	 40.57	0	1452239..1453468	+	409	13542211	truD	TVN1380	-	tRNA pseudouridine synthase D
1381	 43.12	0	1453486..1454865	-	459	13542212	-	TVN1381	-	membrane glycosyltransferase
1382	 44.44	+1	1454962..1455843	-	293	13542213	-	TVN1382	-	electron transfer flavoprotein subunit alpha
1383	 44.44	+1	1455840..1456577	-	245	13542214	-	TVN1383	-	electron transfer flavoprotein subunit beta
1384	 40.87	0	1456691..1457884	-	397	13542215	-	TVN1384	-	major facilitator superfamily permease
1385	 43.98	0	1457991..1458422	+	143	13542216	-	TVN1385	-	hypothetical protein
1386	 44.42	+1	1458424..1459776	-	450	13542217	-	TVN1386	-	dihydrolipoamide dehydrogenase
1387	 42.05	0	1459898..1460734	+	278	13542218	-	TVN1387	-	CBS domain-containing protein
1388	 44.16	0	1460731..1462161	+	476	13542219	-	TVN1388	-	glycyl-tRNA synthetase
1389	 43.46	0	1462163..1463377	-	404	13542220	-	TVN1389	-	membrane component of an uncharacterized iron-regulated ABC-type transporter
1390	 45.99	+1	1463374..1464819	-	481	13542221	-	TVN1390	-	membrane component of an uncharacterized iron-regulated ABC-type transporter
1391	 45.88	+1	1464820..1465560	-	246	13542222	-	TVN1391	-	Iron-regulated ABC transporter ATPase subunit
1392	 41.36	0	1465653..1466300	+	215	13542223	-	TVN1392	-	transcription regulator
1393	 47.52	+1	1466311..1466613	+	100	13542224	-	TVN1393	-	aromatic ring hydroxylating enzyme
1394	 43.24	0	1466683..1467237	+	184	13542225	-	TVN1394	-	transcription factor
1395	 44.85	+1	1467238..1469217	-	659	13542226	-	TVN1395	-	Fe-S oxidoreductase
1396	 43.35	0	1469397..1470524	-	375	13542227	-	TVN1396	-	major facilitator superfamily permease
1397	 41.19	0	1470598..1470915	+	105	13542228	-	TVN1397	-	hypothetical protein
1398	 44.33	+1	1470916..1471506	-	196	13542229	-	TVN1398	-	hypothetical protein
1399	 40.88	0	1471558..1472127	+	189	13542230	-	TVN1399	-	ankyrin repeat-containing protein
1400	 43.97	0	1472194..1473030	+	278	13542231	-	TVN1400	-	adenine-specific DNA methylase
1401	 46.24	+1	1473053..1473478	+	141	13542232	-	TVN1401	-	stress-induced protein
1402	 44.12	0	1473494..1474114	-	206	13542233	-	TVN1402	-	alpha/beta superfamily hydrolase
40.87	MEAN

3.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.