IslandPathversion 1.0

IslandPath Analysis: Thermoanaerobacter sp. X514



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.39 STD DEV: 3.95
Thermoanaerobacter sp. X514, complete genome - 1..2457259
2349 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1614	 33.43	0	1670754..1671815	-	353	167040289	-	Teth514_1652	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1615	 34.63	0	1671828..1672826	-	332	167040290	-	Teth514_1653	-	putative membrane-associated zinc metalloprotease
1616	 31.77	0	1672833..1673981	-	382	167040291	-	Teth514_1654	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1617	 30.26	-1	1673997..1674776	-	259	167040292	-	Teth514_1655	-	phosphatidate cytidylyltransferase
1618	 32.27	0	1674796..1675545	-	249	167040293	-	Teth514_1656	-	undecaprenyl diphosphate synthase
1619	 23.12	-2	1675593..1675778	-	61	167040294	-	Teth514_1657	-	hypothetical protein
1620	 33.33	0	1675775..1676329	-	184	167040295	-	Teth514_1658	-	ribosome recycling factor
1621	 37.82	0	1676332..1677045	-	237	167040296	-	Teth514_1659	-	uridylate kinase
1622	 33.98	0	1677163..1677777	-	204	167040297	-	Teth514_1660	-	elongation factor Ts
1623	 36.86	0	1677863..1678570	-	235	167040298	-	Teth514_1661	-	30S ribosomal protein S2
1624	 30.18	-1	1678714..1678998	-	94	167040299	-	Teth514_1662	-	hypothetical protein
1625	 31.45	0	1679012..1680391	-	459	167040300	-	Teth514_1663	-	hypothetical protein
1626	 29.01	-1	1680393..1681133	-	246	167040301	-	Teth514_1664	-	RNA polymerase, sigma 28 subunit, FliA/WhiG
1627	 34.15	0	1681152..1681640	-	162	167040302	-	Teth514_1665	-	chemoreceptor glutamine deamidase CheD
1628	 32.04	0	1681630..1682247	-	205	167040303	-	Teth514_1666	-	CheC, inhibitor of MCP methylation
1629	 31.22	0	1682253..1682678	-	141	167040304	-	Teth514_1667	-	putative CheW protein
1630	 31.37	0	1682694..1684676	-	660	167040305	-	Teth514_1668	-	CheA signal transduction histidine kinase
1631	 31.28	0	1684666..1685250	-	194	167040306	-	Teth514_1669	-	CheB methylesterase
1632	 30.79	0	1685254..1685883	-	209	167040307	-	Teth514_1670	-	type IV pilus assembly PilZ
1633	 31.46	0	1685880..1686734	-	284	167040308	-	Teth514_1671	-	cobyrinic acid a,c-diamide synthase
1634	 31.09	0	1686738..1687763	-	341	167040309	-	Teth514_1672	-	GTP-binding signal recognition particle
1635	 34.97	0	1687753..1689774	-	673	167040310	-	Teth514_1673	-	flagellar biosynthesis protein FlhA
1636	 34.35	0	1689785..1690867	-	360	167040311	-	Teth514_1674	-	flagellar biosynthetic protein FlhB
1637	 31.42	0	1690873..1691655	-	260	167040312	-	Teth514_1675	-	flagellar biosynthesis protein FliR
1638	 32.22	0	1691662..1691931	-	89	167040313	-	Teth514_1676	-	flagellar biosynthesis protein FliQ
1639	 31.08	0	1691945..1692610	-	221	167040314	-	Teth514_1677	-	flagellar biosynthesis protein FliP
1640	 28.84	-1	1692607..1692984	-	125	167040315	-	Teth514_1678	-	hypothetical protein
1641	 35.83	0	1692995..1693354	-	119	167040316	-	Teth514_1679	-	response regulator receiver protein
1642	 32.98	0	1693374..1694501	-	375	167040317	-	Teth514_1680	-	flagellar motor switch protein
1643	 30.53	0	1694494..1695492	-	332	167040318	-	Teth514_1681	-	flagellar motor switch protein FliM
1644	 27.45	-1	1695508..1695915	-	135	167040319	-	Teth514_1682	-	flagellar basal body-associated protein FliL
1645	 30.48	0	1695912..1696121	-	69	167040320	-	Teth514_1683	-	flagellar FlbD family protein
1646	 38.52	+1	1696170..1697423	-	417	167040321	-	Teth514_1684	-	hypothetical protein
1647	 31.98	0	1697503..1697871	-	122	167040322	-	Teth514_1685	-	flagellar operon protein
1648	 29.04	-1	1697881..1698276	-	131	167040323	-	Teth514_1686	-	flagellar hook capping protein
1649	 30.64	0	1698291..1699664	-	457	167040324	-	Teth514_1687	-	flagellar hook-length control protein
1650	 29.88	-1	1699681..1700259	-	192	167040325	-	Teth514_1688	-	hypothetical protein
1651	 25.68	-2	1700270..1700713	-	147	167040326	-	Teth514_1689	-	flagellar export protein FliJ
1652	 37.06	0	1700720..1702033	-	437	167040327	-	Teth514_1690	-	flagellar protein export ATPase FliI
1653	 30.58	0	1702026..1702751	-	241	167040328	-	Teth514_1691	-	flagellar biosynthesis/type III secretory pathway protein-like protein
1654	 33.93	0	1702789..1703796	-	335	167040329	-	Teth514_1692	-	flagellar motor switch protein G
1655	 34.66	0	1703808..1705319	-	503	167040330	-	Teth514_1693	-	flagellar M-ring protein FliF
1656	 34.01	0	1705347..1705643	-	98	167040331	-	Teth514_1694	-	flagellar hook-basal body protein FliE
1657	 36.71	0	1705650..1706093	-	147	167040332	-	Teth514_1695	-	flagellar basal-body rod protein FlgC
1658	 35.29	0	1706100..1706507	-	135	167040333	-	Teth514_1696	-	flagellar basal-body rod protein FlgB
1659	 32.27	0	1706804..1707556	-	250	167040334	-	Teth514_1697	-	transcriptional repressor CodY
1660	 34.06	0	1707586..1708965	-	459	167040335	-	Teth514_1698	-	ATP-dependent protease ATP-binding subunit
1661	 38.42	+1	1708978..1709508	-	176	167040336	-	Teth514_1699	-	ATP-dependent protease peptidase subunit
1662	 35.59	0	1709588..1711669	-	693	167040337	-	Teth514_1700	-	DNA topoisomerase I
1663	 32.42	0	1711720..1712808	-	362	167040338	-	Teth514_1701	-	DNA protecting protein DprA
1664	 31.00	0	1712898..1713626	+	242	167040339	-	Teth514_1702	-	ribonuclease H
1665	 29.57	-1	1713633..1714004	+	123	167040340	-	Teth514_1703	-	hypothetical protein
1666	 35.26	0	1713993..1714976	-	327	167040341	-	Teth514_1704	-	tryptophanyl-tRNA synthetase
1667	 29.76	-1	1715058..1715924	-	288	167040342	-	Teth514_1705	-	hypothetical protein
1668	 35.03	0	1715987..1717519	-	510	167040343	-	Teth514_1706	-	Mg chelatase, subunit ChlI
1669	 32.73	0	1717536..1718369	-	277	167040344	-	Teth514_1707	-	GTP-binding protein, HSR1-related
1670	 34.49	0	1718414..1718758	-	114	167040345	-	Teth514_1708	-	50S ribosomal protein L19
1671	 34.02	0	1718781..1719509	-	242	167040346	-	Teth514_1709	-	tRNA (guanine-N1)-methyltransferase
1672	 35.32	0	1719506..1720009	-	167	167040347	-	Teth514_1710	-	16S rRNA processing protein RimM
1673	 39.04	+1	1720018..1720245	-	75	167040348	-	Teth514_1711	-	hypothetical protein
1674	 36.02	0	1720271..1720531	-	86	167040349	-	Teth514_1712	-	30S ribosomal protein S16
1675	 37.88	0	1720569..1721909	-	446	167040350	-	Teth514_1713	-	signal recognition particle protein
1676	 31.64	0	1721923..1722276	-	117	167040351	-	Teth514_1714	-	putative helix-turn-helix protein, YlxM/p13 family protein
1677	 32.50	0	1722376..1723335	-	319	167040352	-	Teth514_1715	-	signal recognition particle-docking protein FtsY
1678	 30.30	-1	1723328..1726918	-	1196	167040353	-	Teth514_1716	-	chromosome segregation protein SMC
1679	 30.77	0	1726961..1727194	-	77	167040354	-	Teth514_1717	-	hypothetical protein
1680	 42.53	+2	1727244..1727504	-	86	167040355	-	Teth514_1718	-	stage V sporulation protein S
1681	 30.42	-1	1727610..1728674	-	354	167040356	-	Teth514_1719	-	radical SAM domain-containing protein
1682	 35.09	0	1728671..1729411	-	246	167040357	-	Teth514_1720	-	ribonuclease III
1683	 37.64	0	1729383..1730612	-	409	167040358	-	Teth514_1721	-	beta-ketoacyl synthase
1684	 35.53	0	1730679..1730906	-	75	167040359	-	Teth514_1722	-	acyl carrier protein
1685	 34.81	0	1730949..1731692	-	247	167040360	-	Teth514_1723	-	3-oxoacyl-(acyl-carrier-protein) reductase
1686	 37.42	0	1731695..1732624	-	309	167040361	-	Teth514_1724	-	malonyl CoA-acyl carrier protein transacylase
1687	 39.28	+1	1732629..1733570	-	313	167040362	-	Teth514_1725	-	2-nitropropane dioxygenase, NPD
1688	 38.76	+1	1733583..1734578	-	331	167040363	-	Teth514_1726	-	3-oxoacyl-(acyl carrier protein) synthase III
1689	 36.34	0	1734571..1735569	-	332	167040364	-	Teth514_1727	-	putative glycerol-3-phosphate acyltransferase PlsX
1690	 35.16	0	1735553..1736155	-	200	167040365	-	Teth514_1728	-	fatty acid biosynthesis transcriptional regulator
1691	 38.80	+1	1736277..1736459	-	60	167040366	-	Teth514_1729	-	ribosomal protein L32
1692	 36.01	0	1736477..1736962	-	161	167040367	-	Teth514_1730	-	hypothetical protein
1693	 34.33	0	1737034..1738239	-	401	167040368	-	Teth514_1731	-	acetate kinase
1694	 37.54	0	1738259..1739257	-	332	167040369	-	Teth514_1732	-	phosphotransacetylase
1695	 30.18	-1	1739390..1740595	+	401	167040370	-	Teth514_1733	-	hypothetical protein
1696	 32.74	0	1740671..1741852	+	393	167040371	-	Teth514_1734	-	nucleoside recognition domain-containing protein
1697	 31.40	0	1741853..1742317	-	154	167040372	-	Teth514_1735	-	hypothetical protein
1698	 32.50	0	1742336..1742815	-	159	167040373	-	Teth514_1736	-	pantetheine-phosphate adenylyltransferase
1699	 30.48	0	1742812..1743372	-	186	167040374	-	Teth514_1737	-	putative methyltransferase
1700	 41.23	+1	1743590..1743817	-	75	167040375	-	Teth514_1738	-	small acid-soluble spore protein, alpha/beta type
1701	 43.42	+2	1743961..1744188	-	75	167040376	-	Teth514_1739	-	small acid-soluble spore protein, alpha/beta type
1702	 33.69	0	1744304..1745146	-	280	167040377	-	Teth514_1740	-	degV family protein
1703	 32.75	0	1745164..1747209	-	681	167040378	-	Teth514_1741	-	ATP-dependent DNA helicase RecG
1704	 31.59	0	1747222..1748823	-	533	167040379	-	Teth514_1742	-	Dak phosphatase
1705	 33.33	0	1748813..1749163	-	116	167040380	-	Teth514_1743	-	hypothetical protein
1706	 35.98	0	1749395..1749583	+	62	167040381	-	Teth514_1744	-	ribosomal protein L28
1707	 28.96	-1	1749620..1749802	-	60	167040382	-	Teth514_1745	-	hypothetical protein
1708	 30.66	0	1749862..1750497	-	211	167040383	-	Teth514_1746	-	thiamine pyrophosphokinase
1709	 32.57	0	1750494..1751144	-	216	167040384	-	Teth514_1747	-	ribulose-phosphate 3-epimerase
1710	 34.13	0	1751148..1752029	-	293	167040385	-	Teth514_1748	-	ribosome small subunit-dependent GTPase A
1711	 36.00	0	1752030..1753907	-	625	167040386	-	Teth514_1749	-	protein kinase
1712	 32.80	0	1753904..1754647	-	247	167040387	-	Teth514_1750	-	protein phosphatase 2C domain-containing protein
1713	 33.14	0	1754655..1755683	-	342	167040388	-	Teth514_1751	-	radical SAM protein
34.39	MEAN

3.95	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.