IslandPath Analysis: Thermotoga petrophila RKU-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.02   STD DEV: 3.27
Thermotoga petrophila RKU-1, complete genome - 1..1823511
1785 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
109	 45.90	0	102140..102871	-	243	148269254	-	Tpet_0109	-	WecB/TagA/CpsF family glycosyl transferase
110	 46.02	0	103049..105073	-	674	148269255	-	Tpet_0110	-	RND efflux transporter
111	 45.69	0	105075..105503	-	142	148269256	-	Tpet_0111	-	MarR family transcriptional regulator
112	 44.26	0	105725..106429	+	234	148269257	-	Tpet_0112	-	hypothetical protein
113	 49.32	+1	106638..108032	+	464	148269258	-	Tpet_0113	-	MATE efflux family protein
114	 48.58	0	108038..109132	-	364	148269259	-	Tpet_0114	-	N-acetylglucosamine-6-phosphate deacetylase
115	 46.12	0	109143..110135	-	330	148269260	-	Tpet_0115	-	glutamine--fructose-6-phosphate transaminase (isomerizing)
116	 46.32	0	110149..110964	-	271	148269261	-	Tpet_0116	-	binding-protein-dependent transport systems inner membrane component
117	 44.96	0	110957..111859	-	300	148269262	-	Tpet_0117	-	binding-protein-dependent transport systems inner membrane component
118	 46.87	0	111909..113171	-	420	148269263	-	Tpet_0118	-	extracellular solute-binding protein
119	 46.44	0	113168..114571	-	467	148269264	-	Tpet_0119	-	glycoside hydrolase family 3 protein
120	 45.01	0	114579..115631	-	350	148269265	-	Tpet_0120	-	ROK family protein
121	 46.91	0	115813..116460	-	215	148269266	-	Tpet_0121	-	peroxiredoxin
122	 44.15	0	116621..119818	-	1065	148269267	-	Tpet_0122	-	O-antigen polymerase
123	 47.19	0	119835..120758	-	307	148269268	-	Tpet_0123	-	glycosyl transferase family protein
124	 47.86	0	120763..121464	-	233	148269269	-	Tpet_0124	-	HisJ family histidinol phosphate phosphatase
125	 48.13	0	121461..123035	-	524	148269270	-	Tpet_0125	-	CTP synthetase
126	 51.57	+1	123177..124415	+	412	148269271	-	Tpet_0126	-	Beta-ketoacyl synthase-like protein
127	 49.03	0	124412..124825	+	137	148269272	-	Tpet_0127	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
128	 53.76	+2	124822..125766	+	314	148269273	-	Tpet_0128	-	2-nitropropane dioxygenase, NPD
129	 52.16	+1	125763..126272	+	169	148269274	-	Tpet_0129	-	BioY protein
130	 47.73	0	126269..127150	+	293	148269275	-	Tpet_0130	-	malonyl CoA-acyl carrier protein transacylase
131	 47.22	0	127128..127811	-	227	148269276	-	Tpet_0131	-	2-phosphosulfolactate phosphatase
132	 50.05	+1	127805..128821	-	338	148269277	-	Tpet_0132	-	hypothetical protein
133	 47.48	0	128871..129683	+	270	148269278	-	Tpet_0133	-	ribokinase-like domain-containing protein
134	 46.28	0	129600..131066	-	488	148269279	-	Tpet_0134	-	hypothetical protein
135	 45.04	0	131121..132350	+	409	148269280	-	Tpet_0135	-	transposase, putative
136	 49.40	+1	132391..133143	-	250	148269281	-	Tpet_0136	-	ABC transporter related
137	 49.92	+1	133149..133787	-	212	148269282	-	Tpet_0137	-	hypothetical protein
138	 46.86	0	133771..134184	-	137	148269283	-	Tpet_0138	-	7-cyano-7-deazaguanine reductase
139	 48.71	0	134189..135385	-	398	148269284	-	Tpet_0139	-	phosphomethylpyrimidine kinase type-1
140	 44.98	0	135385..136131	-	248	148269285	-	Tpet_0140	-	xylose isomerase domain-containing protein
141	 52.16	+1	136128..137402	-	424	148269286	-	Tpet_0141	-	thiamine biosynthesis protein ThiC
142	 52.21	+1	137407..138153	-	248	148269287	-	Tpet_0142	-	ribulose-1,5-biphosphate synthetase
143	 52.17	+1	138417..138761	+	114	148269288	-	Tpet_0143	-	hypothetical protein
144	 49.37	+1	138776..139573	+	265	148269289	-	Tpet_0144	-	Linocin_M18 bacteriocin protein
145	 47.09	0	139605..140120	-	171	148269290	-	Tpet_0145	-	hypothetical protein
146	 46.27	0	140333..141337	-	334	148269291	-	Tpet_0146	-	glycosidase, PH1107-related
147	 49.07	0	141378..141593	-	71	148269292	-	Tpet_0147	-	hypothetical protein
148	 49.16	0	141636..142109	-	157	148269293	-	Tpet_0148	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
149	 44.49	0	142173..142916	+	247	148269294	-	Tpet_0149	-	hypothetical protein
150	 47.64	0	142922..143515	+	197	148269295	-	Tpet_0150	-	hypothetical protein
151	 44.10	0	143539..143928	+	129	148269296	-	Tpet_0151	-	transposase IS200-family protein
152	 48.64	0	143913..145121	+	402	148269297	-	Tpet_0152	-	IS605 family transposase OrfB
153	 48.51	0	145215..147296	-	693	148269298	infB	Tpet_0153	-	translation initiation factor IF-2
154	 43.81	0	147307..147621	-	104	148269299	-	Tpet_0154	-	ribosomal protein L7Ae/L30e/S12e/Gadd45
155	 44.14	0	147626..147847	-	73	148269300	-	Tpet_0155	-	hypothetical protein
156	 47.67	0	147851..148666	-	271	148269301	-	Tpet_0156	-	PSP1 domain-containing protein
157	 44.62	0	148657..149595	-	312	148269302	-	Tpet_0157	-	DNA polymerase III gamma/tau subunits-like protein
158	 46.39	0	149656..151455	+	599	148269303	-	Tpet_0158	-	radical SAM domain-containing protein
159	 48.66	0	151452..152867	+	471	148269304	-	Tpet_0159	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
160	 48.67	0	152864..153652	+	262	148269305	-	Tpet_0160	-	GTP-binding protein, HSR1-related
161	 47.86	0	153615..155528	-	637	148269306	-	Tpet_0161	-	alpha amylase, catalytic region
162	 44.26	0	155651..156016	+	121	148269307	-	Tpet_0162	-	regulatory protein GntR, HTH
163	 46.29	0	156016..156810	+	264	148269308	-	Tpet_0163	-	ABC transporter related
164	 44.31	0	156800..157546	+	248	148269309	-	Tpet_0164	-	hypothetical protein
165	 49.84	+1	157561..157881	+	106	148269310	-	Tpet_0165	-	hypothetical protein
166	 47.77	0	157903..158685	-	260	148269311	rpsB	Tpet_0166	-	30S ribosomal protein S2
167	 48.96	0	158825..160072	-	415	148269312	-	Tpet_0167	-	major facilitator transporter
168	 46.12	0	160132..161328	-	398	148269313	-	Tpet_0168	-	glycosyl transferase, group 1
169	 41.31	-1	161325..162089	-	254	148269314	-	Tpet_0169	-	hexapaptide repeat-containing transferase
170	 47.42	0	162249..163412	+	387	148269315	-	Tpet_0170	-	flagellin domain-containing protein
171	 39.88	-1	163520..166102	+	860	148269316	-	Tpet_0171	-	glycosyl transferase family protein
172	 36.86	-2	166105..169080	+	991	148269317	-	Tpet_0172	-	glycosyl transferase family protein
173	 34.59	-2	169080..169238	+	52	148269318	-	Tpet_0173	-	hypothetical protein
174	 47.45	0	169350..170546	+	398	148269319	-	Tpet_0174	-	flavodoxin/nitric oxide synthase
175	 49.12	0	170553..171629	+	358	148269320	-	Tpet_0175	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
176	 44.49	0	171626..172288	+	220	148269321	-	Tpet_0176	-	ubiquinone/menaquinone biosynthesis methyltransferase
177	 49.58	+1	172378..173793	+	471	148269322	-	Tpet_0177	-	glycoside hydrolase family protein
178	 47.00	0	173962..175629	+	555	148269323	-	Tpet_0178	-	phosphoribulokinase/uridine kinase
179	 46.76	0	175626..176504	+	292	148269324	-	Tpet_0179	-	hypothetical protein
180	 44.30	0	176501..176947	+	148	148269325	-	Tpet_0180	-	hypothetical protein
181	 47.66	0	176932..177720	+	262	148269326	-	Tpet_0181	-	tRNA methyltransferase complex GCD14 subunit
182	 48.39	0	177717..178925	+	402	148269327	-	Tpet_0182	-	carboxyl-terminal protease
183	 43.93	0	178922..179308	+	128	148269328	-	Tpet_0183	-	hypothetical protein
184	 40.85	-1	179308..179733	+	141	148269329	-	Tpet_0184	-	hypothetical protein
185	 45.21	0	179740..180960	+	406	148269330	-	Tpet_0185	-	glycosyl transferase, group 1
186	 49.77	+1	180966..181610	+	214	148269331	-	Tpet_0186	-	hypothetical protein
187	 42.86	0	181610..182239	+	209	148269332	-	Tpet_0187	-	metallophosphoesterase
188	 47.53	0	182241..182726	+	161	148269333	-	Tpet_0188	-	pantetheine-phosphate adenylyltransferase
189	 47.89	0	182723..184645	+	640	148269334	-	Tpet_0189	-	threonyl-tRNA synthetase
190	 45.00	0	184648..185487	+	279	148269335	-	Tpet_0190	-	metal dependent phosphohydrolase
191	 46.71	0	185467..185952	-	161	148269336	-	Tpet_0191	-	hypothetical protein
192	 43.22	0	185964..187136	-	390	148269337	-	Tpet_0192	-	hypothetical protein
193	 46.12	0	187142..187978	-	278	148269338	-	Tpet_0193	-	mannose-6-phosphate isomerase, type I
194	 43.64	0	187975..189342	-	455	148269339	-	Tpet_0194	-	hypothetical protein
195	 46.79	0	189358..190665	-	435	148269340	-	Tpet_0195	-	tRNA (uracil-5-)-methyltransferase Gid
196	 46.23	0	190670..191080	-	136	148269341	-	Tpet_0196	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
197	 45.82	0	191077..191829	-	250	148269342	-	Tpet_0197	-	hypothetical protein
198	 44.74	0	191816..192385	-	189	148269343	-	Tpet_0198	-	hypothetical protein
199	 46.22	0	192396..192845	-	149	148269344	-	Tpet_0199	-	D-tyrosyl-tRNA deacylase
200	 44.66	0	192842..194986	-	714	148269345	-	Tpet_0200	-	(p)ppGpp synthetase I, SpoT/RelA
201	 45.01	0	195370..196200	-	276	148269346	-	Tpet_0201	-	hypothetical protein
202	 47.40	0	196184..197491	-	435	148269347	-	Tpet_0202	-	peptidase U62, modulator of DNA gyrase
203	 51.55	+1	197488..198876	-	462	148269348	-	Tpet_0203	-	peptidase U62, modulator of DNA gyrase
204	 48.37	0	198986..199843	+	285	148269349	-	Tpet_0204	-	hypothetical protein
205	 46.99	0	199840..200769	-	309	148269350	-	Tpet_0205	-	CaCA family Na(+)/Ca(+) antiporter
206	 50.71	+1	200777..201196	-	139	148269351	-	Tpet_0206	-	hypothetical protein
207	 47.68	0	201193..203325	-	710	148269352	-	Tpet_0207	-	ribonuclease R
208	 50.48	+1	203340..203969	-	209	148269353	-	Tpet_0208	-	uracil phosphoribosyltransferase
46.02	MEAN

3.27	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.