IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. WH 7803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.32 STD DEV: 4.87
Synechococcus sp. WH 7803, complete genome - 1..2366980
2533 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1746	 62.05	0	1598495..1599793	+	432	148240082	murA	SynWH7803_1746	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1747	 62.57	0	1599995..1601215	+	406	148240083	argD	SynWH7803_1747	-	acetylornithine aminotransferase
1748	 66.10	+1	1601212..1602456	+	414	148240084	folC	SynWH7803_1748	-	FolC bifunctional protein (folylpolyglutamate synthase / dihydrofolate synthase)
1749	 62.10	0	1602479..1603003	+	174	148240085	-	SynWH7803_1749	-	pentapeptide repeat-containing protein
1750	 65.09	0	1602993..1604324	-	443	148240086	-	SynWH7803_1750	-	FAD/FMN-containing dehydrogenase
1751	 66.83	+1	1604352..1605581	-	409	148240087	codA	SynWH7803_1751	-	cytosine deaminase
1752	 64.61	0	1605578..1606063	-	161	148240088	-	SynWH7803_1752	-	hypothetical protein
1753	 64.60	0	1606138..1607199	-	353	148240089	-	SynWH7803_1753	-	hypothetical protein
1754	 63.34	0	1607199..1608281	-	360	148240090	-	SynWH7803_1754	-	L-alanine-DL-glutamate epimerase
1755	 61.90	0	1608409..1609773	+	454	148240091	miaB	SynWH7803_1755	-	2-methylthioadenine synthetase
1756	 63.75	0	1609812..1610873	+	353	148240092	ddl	SynWH7803_1756	-	D-alanine--D-alanine ligase
1757	 60.05	0	1610902..1611309	+	135	148240093	-	SynWH7803_1757	-	hypothetical protein
1758	 63.85	0	1611309..1612160	+	283	148240094	ftsQ	SynWH7803_1758	-	cell division protein FtsQ
1759	 61.23	0	1612267..1613388	+	373	148240095	ftsZ	SynWH7803_1759	-	cell division protein FtsZ
1760	 63.61	0	1613580..1614398	+	272	148240096	panB	SynWH7803_1760	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1761	 65.05	0	1614274..1615572	-	432	148240097	hemN	SynWH7803_1761	-	oxygen independent coproporphyrinogen III oxidase
1762	 62.68	0	1615596..1616798	+	400	148240098	-	SynWH7803_1762	-	integral membrane protein
1763	 59.38	0	1616829..1617500	+	223	148240099	clpP	SynWH7803_1763	-	ATP-dependent Clp protease-like protein
1764	 59.54	0	1617546..1618148	+	200	148240100	clpP	SynWH7803_1764	-	ATP-dependent Clp protease proteolytic subunit
1765	 60.84	0	1618205..1619200	+	331	148240101	ilvC	SynWH7803_1765	-	ketol-acid reductoisomerase
1766	 65.76	+1	1619229..1620224	+	331	148240102	cobD/cbiB	SynWH7803_1766	-	cobalamin biosynthesis protein CobD/CbiB
1767	 60.68	0	1620240..1620974	-	244	148240103	-	SynWH7803_1767	-	sugar transferase
1768	 55.81	0	1621195..1621452	+	85	148240104	-	SynWH7803_1768	-	hypothetical protein
1769	 67.18	+1	1621592..1623547	-	651	148240105	-	SynWH7803_1769	-	membrane metal-binding protein
1770	 61.73	0	1623601..1624491	-	296	148240106	glyQ	SynWH7803_1770	-	glycyl-tRNA synthetase subunit alpha
1771	 61.21	0	1624541..1624888	-	115	148240107	-	SynWH7803_1771	-	hypothetical protein
1772	 64.10	0	1624975..1625676	-	233	148240108	ubiE	SynWH7803_1772	-	menaquinone biosynthesis methyltransferase ubiE
1773	 55.56	0	1625673..1625906	-	77	148240109	-	SynWH7803_1773	-	hypothetical protein
1774	 62.75	0	1625964..1626755	-	263	148240110	hisF	SynWH7803_1774	-	imidazole glycerol phosphate synthase subunit HisF
1775	 56.62	0	1626810..1627028	+	72	148240111	-	SynWH7803_1775	-	hypothetical protein
1776	 60.27	0	1627040..1627993	+	317	148240112	chlG	SynWH7803_1776	-	bacteriochlorophyll/chlorophyll a synthase
1777	 63.04	0	1627990..1630029	+	679	148240113	-	SynWH7803_1777	-	glycosyltransferase
1778	 66.74	+1	1630007..1631350	-	447	148240114	rsmB	SynWH7803_1778	-	ribosomal RNA small subunit methyltransferase B
1779	 56.93	0	1631487..1633109	+	540	148240115	-	SynWH7803_1779	-	porin-like protein
1780	 62.81	0	1633038..1633478	-	146	148240116	-	SynWH7803_1780	-	methylated DNA-protein cysteine methyltransferase
1781	 67.87	+1	1633478..1633810	-	110	148240117	-	SynWH7803_1781	-	hypothetical protein
1782	 64.35	0	1633953..1634642	+	229	148240118	spoU	SynWH7803_1782	-	tRNA (guanosine-2'-O-)-methyltransferase
1783	 61.67	0	1634693..1635412	+	239	148240119	-	SynWH7803_1783	-	glutaredoxine domain-containing protein
1784	 62.45	0	1635447..1635707	-	86	148240120	-	SynWH7803_1784	-	hypothetical protein
1785	 65.86	+1	1635728..1636600	-	290	148240121	dppC	SynWH7803_1785	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease component
1786	 64.47	0	1636666..1638075	+	469	148240122	-	SynWH7803_1786	-	two-component system sensor histidine kinase
1787	 61.29	0	1638075..1638446	+	123	148240123	-	SynWH7803_1787	-	hypothetical protein
1788	 63.87	0	1638394..1639857	-	487	148240124	-	SynWH7803_1788	-	two-component system sensor histidine kinase
1789	 63.95	0	1639951..1640538	-	195	148240125	-	SynWH7803_1789	-	hypothetical protein
1790	 67.80	+1	1640546..1641073	-	175	148240126	-	SynWH7803_1790	-	pili subunit superfamily protein
1791	 66.67	+1	1641070..1641474	-	134	148240127	-	SynWH7803_1791	-	hypothetical protein
1792	 70.08	+2	1641474..1641971	-	165	148240128	-	SynWH7803_1792	-	hypothetical protein
1793	 63.84	0	1642048..1642755	+	235	148240129	-	SynWH7803_1793	-	two-component system response regulator
1794	 64.80	0	1642730..1644016	-	428	148240130	-	SynWH7803_1794	-	two-component system sensor histidine kinase
1795	 49.68	-2	1644150..1644614	+	154	148240131	-	SynWH7803_1795	-	pili subunit superfamily protein
1796	 47.42	-2	1644983..1645486	+	167	148240132	-	SynWH7803_1796	-	pili subunit superfamily protein
1797	 47.24	-2	1645501..1647477	+	658	148240133	-	SynWH7803_1797	-	hypothetical protein
1798	 48.64	-2	1647606..1648121	+	171	148240134	-	SynWH7803_1798	-	pili subunit superfamily protein
1799	 47.04	-2	1648118..1648810	+	230	148240135	-	SynWH7803_1799	-	pili subunit superfamily protein
1800	 47.99	-2	1648950..1650587	+	545	148240136	-	SynWH7803_1800	-	hypothetical protein
1801	 58.79	0	1650607..1652421	-	604	148240137	lepA	SynWH7803_1801	-	GTP-binding protein LepA
1802	 57.01	0	1652603..1654600	+	665	148240138	phoD	SynWH7803_1802	-	putative phosphodiesterase/alkaline phosphatase D
1803	 64.84	0	1654614..1656146	-	510	148240139	-	SynWH7803_1803	-	Zn-dependent carboxypeptidase
1804	 62.96	0	1656154..1656396	-	80	148240140	-	SynWH7803_1804	-	hypothetical protein
1805	 62.06	0	1656469..1656750	+	93	148240141	-	SynWH7803_1805	-	putative pterin-4-alpha-carbinolamine dehydratase
1806	 58.61	0	1656788..1657879	+	363	148240142	-	SynWH7803_1806	-	G3E family GTPase
1807	 63.27	0	1657932..1658078	+	48	148240143	-	SynWH7803_1807	-	hypothetical protein
1808	 63.22	0	1658213..1659256	+	347	148240144	futA	SynWH7803_1808	-	ABC-type Fe3+ transport system, periplasmic component
1809	 67.23	+1	1659264..1660856	+	530	148240145	futB	SynWH7803_1809	-	ABC-type Fe3+ transport system permease component
1810	 67.77	+1	1660835..1663015	-	726	148240146	-	SynWH7803_1810	-	phosphatase
1811	 69.03	+1	1663018..1664031	-	337	148240147	-	SynWH7803_1811	-	hypothetical protein
1812	 61.07	0	1664033..1665373	-	446	148240148	-	SynWH7803_1812	-	MFS family sugar transporter
1813	 65.63	+1	1665520..1666485	-	321	148240149	-	SynWH7803_1813	-	hypothetical protein
1814	 65.60	+1	1666479..1667699	-	406	148240150	-	SynWH7803_1814	-	hypothetical protein
1815	 67.29	+1	1667696..1668334	-	212	148240151	-	SynWH7803_1815	-	hypothetical protein
1816	 62.35	0	1668334..1668981	-	215	148240152	-	SynWH7803_1816	-	hypothetical protein
1817	 62.70	0	1669068..1669799	+	243	148240153	-	SynWH7803_1817	-	TPR repeat-containing protein
1818	 62.67	0	1669771..1670070	-	99	148240154	-	SynWH7803_1818	-	hypothetical protein
1819	 61.13	0	1670131..1670961	+	276	148240155	xthA	SynWH7803_1819	-	exodeoxyribonuclease III
1820	 62.82	0	1670958..1672466	-	502	148240156	glcD	SynWH7803_1820	-	glycolate oxidase subunit GlcD
1821	 62.67	0	1672566..1673867	+	433	148240157	-	SynWH7803_1821	-	glutamate-1-semialdehyde aminotransferase
1822	 57.84	0	1673909..1675120	+	403	148240158	oprB	SynWH7803_1822	-	carbohydrate-selective porin OprB related protein
1823	 50.10	-2	1675122..1675616	-	164	148240159	-	SynWH7803_1823	-	nucleotide-binding protein
1824	 56.26	0	1675642..1676208	-	188	148240160	-	SynWH7803_1824	-	hypothetical protein
1825	 64.88	0	1676264..1676710	+	148	148240161	-	SynWH7803_1825	-	hypothetical protein
1826	 58.47	0	1676707..1677621	-	304	148240162	-	SynWH7803_1826	-	prohibitin family protein
1827	 63.06	0	1677680..1678123	+	147	148240163	-	SynWH7803_1827	-	putative membrane protein implicated in regulation of membrane protease activity
1828	 56.92	0	1678127..1678639	-	170	148240164	-	SynWH7803_1828	-	Rossmann fold nucleotide-binding protein involved in DNA uptake
1829	 59.41	0	1678676..1679764	-	362	148240165	-	SynWH7803_1829	-	phosphotransacetylase domain-containing protein
1830	 63.25	0	1679791..1680171	-	126	148240166	-	SynWH7803_1830	-	hypothetical protein
1831	 59.26	0	1680192..1680974	+	260	148240167	-	SynWH7803_1831	-	short chain dehydrogenase
1832	 59.05	0	1680955..1681794	-	279	148240168	map	SynWH7803_1832	-	methionine aminopeptidase
1833	 58.73	0	1681865..1682179	+	104	148240169	-	SynWH7803_1833	-	hypothetical protein
1834	 58.38	0	1682212..1682706	+	164	148240170	rplS	SynWH7803_1834	-	50S ribosomal protein L19
1835	 55.03	-1	1682879..1683067	+	62	148240171	-	SynWH7803_1835	-	hypothetical protein
1836	 59.61	0	1683353..1684783	+	476	148240172	gltX	SynWH7803_1836	-	glutamyl-tRNA synthetase
1837	 64.43	0	1684766..1686016	-	416	148240173	-	SynWH7803_1837	-	putative Na+/H+ antiporter
1838	 58.54	0	1686006..1686251	-	81	148240174	-	SynWH7803_1838	-	hypothetical protein
1839	 63.92	0	1686251..1686832	-	193	148240175	-	SynWH7803_1839	-	hypothetical protein
1840	 64.24	0	1686777..1687889	-	370	148240176	nfrC	SynWH7803_1840	-	UDP-N-acetylglucosamine 2-epimerase
1841	 59.86	0	1687892..1689184	+	430	148240177	pilT	SynWH7803_1841	-	twitching motility protein
1842	 58.08	0	1689205..1689402	-	65	148240178	hli	SynWH7803_1842	-	high light inducible protein
1843	 63.21	0	1689439..1690509	-	356	148240179	gcp	SynWH7803_1843	-	o-sialoglycoprotein endopeptidase
1844	 59.38	0	1690586..1691065	+	159	148240180	psaF	SynWH7803_1844	-	photosystem I reaction centre PsaF protein
1845	 49.12	-2	1691104..1691217	+	37	148240181	psaJ	SynWH7803_1845	-	photosystem I reaction center subunit IX
60.32	MEAN

4.87	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.