IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2539	 59.61	0	2706381..2706791	+	136	86610041	rpsH	CYB_2610	-	30S ribosomal protein S8
2540	 58.06	0	2706825..2707370	+	181	86610042	rplF	CYB_2611	-	50S ribosomal protein L6
2541	 58.81	0	2707402..2707770	+	122	86610043	rplR	CYB_2612	-	50S ribosomal protein L18
2542	 60.89	0	2707789..2708325	+	178	86610044	rpsE	CYB_2613	-	30S ribosomal protein S5
2543	 63.36	+1	2708363..2708815	+	150	86610045	rplO	CYB_2614	-	50S ribosomal protein L15
2544	 56.51	0	2708968..2710266	+	432	86610046	secY	CYB_2615	-	preprotein translocase subunit SecY
2545	 61.17	0	2710266..2710847	+	193	86610047	adk	CYB_2616	-	adenylate kinase
2546	 59.56	0	2710886..2711659	+	257	86610048	map-2	CYB_2617	-	methionine aminopeptidase
2547	 52.89	-1	2711790..2712014	+	74	86610049	infA	CYB_2618	-	translation initiation factor IF-1
2548	 57.53	0	2712092..2712682	+	196	86610050	-	CYB_2619	-	hypothetical protein
2549	 60.52	0	2712989..2713297	+	102	86610051	-	CYB_2620	-	hypothetical protein
2550	 58.90	0	2713442..2714329	-	295	86610052	-	CYB_2621	-	PRC-barrel domain-containing protein
2551	 61.75	0	2714417..2715556	-	379	86610053	-	CYB_2622	-	glycosyl transferase, group 1 family protein
2552	 57.40	0	2715650..2716102	-	150	86610054	-	CYB_2623	-	Rieske family iron-sulfur cluster-binding protein
2553	 51.58	-1	2716343..2716912	-	189	86610055	-	CYB_2624	-	hypothetical protein
2554	 60.68	0	2717150..2719069	-	639	86610056	-	CYB_2625	-	R3H domain-containing protein
2555	 59.46	0	2719085..2720125	-	346	86610057	-	CYB_2626	-	iron-sulfur cluster-binding protein
2556	 57.88	0	2720214..2720657	-	147	86610058	-	CYB_2627	-	hypothetical protein
2557	 59.33	0	2720921..2721424	+	167	86610059	msrB	CYB_2628	-	methionine-R-sulfoxide reductase
2558	 59.83	0	2721474..2722277	+	267	86610060	-	CYB_2629	-	iron permease
2559	 59.15	0	2722676..2722888	-	70	86610061	-	CYB_2630	-	CP12 domain-containing protein
2560	 60.79	0	2723146..2723826	-	226	86610062	-	CYB_2631	-	ABC transporter, ATP-binding protein
2561	 56.67	0	2723863..2724132	-	89	86610063	-	CYB_2632	-	hypothetical protein
2562	 60.35	0	2724284..2724742	-	152	86610064	-	CYB_2633	-	MAPEG family protein
2563	 59.13	0	2724877..2725314	-	145	86610065	-	CYB_2634	-	hypothetical protein
2564	 62.14	0	2725444..2727342	+	632	86610066	glmU	CYB_2635	-	UDP-N-acetylglucosamine pyrophosphorylase
2565	 44.97	-2	2728451..2728828	+	125	86610067	-	CYB_2638	-	ISSoc13, transposase orfA
2566	 42.89	-2	2728786..2729193	+	135	86610068	-	CYB_2639	-	ISSoc13, transposase orfB
2567	 59.42	0	2729688..2730170	+	160	86610069	-	CYB_2641	-	pentapeptide repeat-containing protein
2568	 59.42	0	2730222..2730497	+	91	86610070	-	CYB_2642	-	hypothetical protein
2569	 57.70	0	2730695..2731954	+	419	86610071	ispH	CYB_2643	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
2570	 62.25	0	2731981..2732931	+	316	86610072	-	CYB_2645	-	auxin efflux carrier (AEC) family protein
2571	 56.92	0	2732928..2733122	-	64	86610073	-	CYB_2644	-	hypothetical protein
2572	 61.07	0	2733293..2734828	-	511	86610074	-	CYB_2646	-	hypothetical protein
2573	 59.96	0	2734923..2735891	+	322	86610075	-	CYB_2647	-	aminomethyltransferase, putative
2574	 52.16	-1	2735956..2736210	-	84	86610076	-	CYB_2648	-	HNH endonuclease domain-containing protein
2575	 51.09	-1	2737442..2737852	-	136	86610077	-	CYB_2649	-	hypothetical protein
2576	 48.01	-2	2737900..2740434	-	844	86610078	-	CYB_2650	-	hypothetical protein
2577	 57.49	0	2740771..2741424	-	217	86610079	-	CYB_2652	-	Crp/FNR family transcriptional regulator
2578	 52.27	-1	2741541..2741672	-	43	86610080	-	CYB_2653	-	hypothetical protein
2579	 56.19	0	2741719..2743389	-	556	86610081	-	CYB_2654	-	hypothetical protein
2580	 57.54	0	2743390..2743959	-	189	86610082	-	CYB_2655	-	hypothetical protein
2581	 62.48	0	2743993..2744994	-	333	86610083	-	CYB_2656	-	zinc-binding dehydrogenase family oxidoreductase
2582	 55.32	0	2745262..2746416	-	384	86610084	-	CYB_2657	-	ISSoc8, transposase
2583	 55.30	0	2746711..2747625	-	304	86610085	-	CYB_2658	-	hypothetical protein
2584	 64.24	+1	2747957..2749357	-	466	86610086	-	CYB_2659	-	amidase
2585	 56.61	0	2749354..2749542	-	62	86610087	-	CYB_2660	-	hypothetical protein
2586	 58.93	0	2749614..2750246	-	210	86610088	-	CYB_2661	-	hypothetical protein
2587	 44.71	-2	2750457..2750834	+	125	86610089	-	CYB_2662	-	ISSoc13, transposase orfA
2588	 42.89	-2	2750792..2751199	+	135	86610090	-	CYB_2663	-	ISSoc13, transposase orfB
2589	 60.67	0	2751214..2752080	-	288	86610091	-	CYB_2664	-	hypothetical protein
2590	 59.89	0	2752205..2753149	+	314	86610092	accD	CYB_2665	-	acetyl-CoA carboxylase subunit beta
2591	 53.87	-1	2753410..2753784	+	124	86610093	-	CYB_2666	-	anti-anti-sigma factor
2592	 60.14	0	2753886..2754590	+	234	86610094	-	CYB_2667	-	hypothetical protein
2593	 59.68	0	2754666..2756882	-	738	86610095	-	CYB_2668	-	TrkA domain-containing protein
2594	 57.88	0	2757304..2758350	+	348	86610096	-	CYB_2669	-	iron ABC transporter periplasmic-binding protein
2595	 48.45	-2	2758341..2758889	+	182	86610097	-	CYB_2670	-	hypothetical protein
2596	 61.73	0	2758983..2760683	+	566	86610098	-	CYB_2671	-	iron ABC transporter permease
2597	 61.27	0	2760689..2761633	-	314	86610099	atpG	CYB_2672	-	F0F1 ATP synthase subunit gamma
2598	 59.30	0	2761695..2763215	-	506	86610100	atpA	CYB_2673	-	F0F1 ATP synthase subunit alpha
2599	 58.47	0	2763260..2763808	-	182	86610101	atpH	CYB_2674	-	F0F1 ATP synthase subunit delta
2600	 60.28	0	2763829..2764392	-	187	86610102	atpF	CYB_2675	-	F0F1 ATP synthase subunit B
2601	 58.02	0	2764428..2764901	-	157	86610103	-	CYB_2676	-	F0F1 ATP synthase subunit B'
2602	 58.94	0	2764996..2765241	-	81	86610104	atpE	CYB_2677	-	F0F1 ATP synthase subunit C
2603	 54.70	0	2765262..2765495	-	77	86610105	-	CYB_2678	-	hypothetical protein
2604	 55.02	0	2765470..2766216	-	248	86610106	atpB	CYB_2679	-	F0F1 ATP synthase subunit A
2605	 57.51	0	2766222..2766614	-	130	86610107	-	CYB_2680	-	ATP synthase protein I
2606	 47.92	-2	2767252..2767347	-	31	86610108	-	CYB_2681	-	hypothetical protein
2607	 60.20	0	2767423..2768010	+	195	86610109	-	CYB_2682	-	hypothetical protein
2608	 63.17	+1	2768007..2768321	+	104	86610110	-	CYB_2683	-	hypothetical protein
2609	 61.83	0	2768336..2769928	-	530	86610111	gpmI	CYB_2684	-	phosphoglyceromutase
2610	 58.38	0	2770144..2770662	-	172	86610112	-	CYB_2685	-	TPR repeat-containing protein
2611	 59.68	0	2770702..2771202	-	166	86610113	dps	CYB_2686	-	DNA starvation/stationary phase protection protein Dps
2612	 63.91	+1	2771313..2772692	-	459	86610114	trmE	CYB_2687	-	tRNA modification GTPase TrmE
2613	 59.52	0	2772843..2775443	+	866	86610115	glgP	CYB_2688	-	alpha-glucan phosphorylases
2614	 60.08	0	2775856..2776917	+	353	86610116	-	CYB_2690	-	TPR repeat-containing protein
2615	 59.14	0	2776914..2777723	-	269	86610117	-	CYB_2689	-	DNA-binding response regulator
2616	 60.96	0	2777873..2779012	+	379	86610118	fni	CYB_2691	-	isopentenyl pyrophosphate isomerase
2617	 57.91	0	2779284..2780882	-	532	86610119	-	CYB_2692	-	hypothetical protein
2618	 58.91	0	2781228..2781923	-	231	86610120	-	CYB_2694	-	hypothetical protein
2619	 61.39	0	2782184..2783338	-	384	86610121	-	CYB_2695	-	FAD-binding protein
2620	 50.83	-1	2783382..2784644	-	420	86610122	-	CYB_2696	-	ISSoc12, transposase
2621	 59.67	0	2785261..2786232	+	323	86610123	coxB	CYB_2697	-	cytochrome c oxidase, subunit II
2622	 56.88	0	2786310..2788016	+	568	86610124	ctaD	CYB_2698	-	cytochrome c oxidase, subunit I
2623	 55.23	0	2788135..2788746	+	203	86610125	ctaE	CYB_2700	-	cytochrome c oxidase, subunit III
2624	 57.20	0	2788734..2789726	-	330	86610126	holA	CYB_2699	-	DNA polymerase III subunit delta
2625	 55.93	0	2789872..2791026	-	384	86610127	-	CYB_2701	-	ISSoc8, transposase
2626	 50.63	-1	2791341..2791577	+	78	86610128	-	CYB_2702	-	hypothetical protein
2627	 59.89	0	2791954..2793369	+	471	86610129	-	CYB_2703	-	putative inorganic carbon transporter/0-antigen polymerase (ICT/OAP) family protein
2628	 52.80	-1	2793521..2793859	+	112	86610130	glnB	CYB_2704	-	nitrogen regulatory protein P-II
2629	 57.61	0	2794011..2795423	+	470	86610131	amt	CYB_2705	-	ammonium transporter
2630	 59.04	0	2795623..2796291	+	222	86610132	ispD	CYB_2706	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2631	 55.34	0	2796783..2798000	+	405	86610133	-	CYB_2707	-	ISSoc1, transposase
2632	 62.80	+1	2798462..2799262	+	266	86610134	cobM	CYB_2708	-	precorrin-4 C11-methyltransferase
2633	 58.59	0	2799601..2801532	+	643	86610135	-	CYB_2709	-	TPR repeat-containing protein
2634	 61.47	0	2801571..2802398	+	275	86610136	rhdA	CYB_2710	-	thiosulfate sulfurtransferase
2635	 61.15	0	2802395..2803573	+	392	86610137	-	CYB_2711	-	pyridine nucleotide-disulphide oxidoreductase
2636	 59.63	0	2803741..2804223	+	160	86610138	-	CYB_2712	-	NifU family SUF system FeS assembly protein
2637	 64.18	+1	2804326..2806095	+	589	86610139	-	CYB_2714	-	ISSoc9, transposase
2638	 59.42	0	2806084..2806359	-	91	86610140	-	CYB_2713	-	BolA/YrbA family protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.