IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1758	 56.71	0	1889854..1890084	+	76	86609262	-	CYB_1804	-	hypothetical protein
1759	 51.64	-1	1890121..1890333	-	70	86609263	-	CYB_1805	-	hypothetical protein
1760	 59.71	0	1890422..1891471	+	349	86609264	-	CYB_1806	-	VIC family potassium channel protein
1761	 60.39	0	1891501..1892169	-	222	86609265	-	CYB_1807	-	phosphotransferase domain-containing protein
1762	 59.97	0	1892268..1893431	-	387	86609266	-	CYB_1808	-	soluble hydrogenase, tritium exchange subunit, putative
1763	 58.46	0	1893620..1894801	-	393	86609267	-	CYB_1810	-	CO2 hydration protein
1764	 58.91	0	1894838..1896346	-	502	86609268	-	CYB_1811	-	NADH-ubiquinone/plastoquinone oxidoreductase subunit 4 family protein
1765	 61.69	0	1896359..1898188	-	609	86609269	-	CYB_1812	-	NAD(P)H-quinone oxidoreductase subunit F
1766	 63.63	+1	1898317..1899534	-	405	86609270	-	CYB_1813	-	hypothetical protein
1767	 59.23	0	1899636..1899971	+	111	86609271	-	CYB_1814	-	hypothetical protein
1768	 63.13	+1	1900081..1901127	+	348	86609272	thiE	CYB_1815	-	thiamine-phosphate pyrophosphorylase
1769	 60.64	0	1901329..1902870	+	513	86609273	-	CYB_1816	-	AAA family ATPase
1770	 43.47	-2	1902974..1903831	-	285	86609274	-	CYB_1817	-	DnaJ domain-containing protein
1771	 59.82	0	1904034..1905566	-	510	86609275	-	CYB_1818	-	leucyl aminopeptidase
1772	 61.61	0	1905648..1906973	-	441	86609276	-	CYB_1819	-	hypothetical protein
1773	 61.73	0	1907066..1908685	-	539	86609277	-	CYB_1820	-	M23B family peptidase
1774	 55.96	0	1909095..1910672	+	525	86609278	cysS	CYB_1821	-	cysteinyl-tRNA synthetase
1775	 63.29	+1	1910825..1913488	+	887	86609279	-	CYB_1822	-	radical SAM domain-containing protein
1776	 61.28	0	1914255..1916426	+	723	86609280	-	CYB_1823	-	ribonuclease
1777	 62.77	+1	1916462..1917103	+	213	86609281	rnhB	CYB_1824	-	ribonuclease HII
1778	 55.28	0	1917271..1918464	+	397	86609282	-	CYB_1826	-	ISSoc1, transposase
1779	 56.64	0	1918466..1919422	-	318	86609283	-	CYB_1827	-	putative sulfite oxidase subunit YedY
1780	 59.29	0	1919747..1920166	-	139	86609284	-	CYB_1828	-	hypothetical protein
1781	 58.93	0	1920241..1920576	-	111	86609285	gvpJ	CYB_1829	-	gas vesicle protein J
1782	 59.32	0	1920618..1921502	-	294	86609286	gvpN	CYB_1830	-	gas vesicle protein GvpN
1783	 60.18	0	1921582..1922598	-	338	86609287	gvpC	CYB_1831	-	gas vesicle structural protein GvpC
1784	 58.50	0	1922634..1922780	+	48	86609288	-	CYB_1832	-	hypothetical protein
1785	 56.16	0	1922888..1923106	-	72	86609289	gvpA	CYB_1833	-	gas vesicle synthesis protein GvpA
1786	 58.33	0	1923468..1923731	+	87	86609290	-	CYB_1834	-	hypothetical protein
1787	 54.82	0	1924055..1924738	+	227	86609291	-	CYB_1835	-	V4R domain-containing protein
1788	 53.57	-1	1924735..1924986	+	83	86609292	-	CYB_1836	-	hypothetical protein
1789	 55.71	0	1925044..1925481	+	145	86609293	-	CYB_1837	-	hypothetical protein
1790	 56.91	0	1925751..1926437	+	228	86609294	-	CYB_1838	-	V4R domain-containing protein
1791	 55.73	0	1926541..1926915	+	124	86609295	aroH	CYB_1839	-	chorismate mutase
1792	 58.46	0	1927300..1927701	-	133	86609296	-	CYB_1840	-	hypothetical protein
1793	 61.69	0	1927883..1928686	+	267	86609297	-	CYB_1841	-	hypothetical protein
1794	 57.30	0	1928768..1931704	-	978	86609298	ppc	CYB_1842	-	phosphoenolpyruvate carboxylase
1795	 52.08	-1	1931815..1932006	+	63	86609299	-	CYB_1844	-	hypothetical protein
1796	 56.41	0	1931821..1932054	-	77	86609300	-	CYB_1843	-	hypothetical protein
1797	 56.78	0	1932067..1932339	+	90	86609301	-	CYB_1845	-	hypothetical protein
1798	 54.87	0	1932336..1932530	+	64	86609302	-	CYB_1846	-	hypothetical protein
1799	 63.79	+1	1932557..1933669	+	370	86609303	ribD	CYB_1847	-	riboflavin biosynthesis protein RibD
1800	 59.87	0	1933938..1935041	+	367	86609304	-	CYB_1848	-	hypothetical protein
1801	 55.86	0	1935156..1935377	-	73	86609305	-	CYB_1849	-	hypothetical protein
1802	 59.84	0	1935445..1935825	-	126	86609306	-	CYB_1850	-	hypothetical protein
1803	 53.41	-1	1935908..1936156	+	82	86609307	-	CYB_1851	-	hypothetical protein
1804	 55.96	0	1936472..1937302	-	276	86609308	-	CYB_1852	-	hypothetical protein
1805	 57.97	0	1937296..1937502	+	68	86609309	-	CYB_1853	-	hypothetical protein
1806	 57.86	0	1937614..1938669	+	351	86609310	-	CYB_1854	-	clavaminate synthase
1807	 46.45	-2	1938870..1939052	+	60	86609311	-	CYB_1855	-	hypothetical protein
1808	 54.64	0	1939145..1939984	-	279	86609312	-	CYB_1856	-	TPR repeat-containing protein
1809	 57.72	0	1940030..1940677	-	215	86609313	-	CYB_1857	-	hypothetical protein
1810	 58.01	0	1940691..1941152	-	153	86609314	-	CYB_1858	-	hypothetical protein
1811	 59.73	0	1941223..1942116	-	297	86609315	crtE	CYB_1859	-	geranylgeranyl diphosphate synthase
1812	 50.00	-2	1942190..1942297	-	35	86609316	-	CYB_1860	-	hypothetical protein
1813	 59.85	0	1942420..1943460	+	346	86609317	hemE	CYB_1861	-	uroporphyrinogen decarboxylase
1814	 62.40	0	1943851..1944834	+	327	86609318	-	CYB_1863	-	glycosyl transferase, group 2 family protein
1815	 60.77	0	1944789..1945670	-	293	86609319	-	CYB_1862	-	inositol monophosphatase family protein
1816	 60.53	0	1945812..1947782	+	656	86609320	-	CYB_1864	-	serine/threonine protein kinase
1817	 58.14	0	1948151..1949674	-	507	86609321	-	CYB_1865	-	S10 family peptidase
1818	 59.60	0	1949759..1950352	-	197	86609322	-	CYB_1866	-	hypothetical protein
1819	 63.15	+1	1950554..1951576	-	340	86609323	thiL	CYB_1867	-	thiamine monophosphate kinase
1820	 58.37	0	1951691..1952341	-	216	86609324	-	CYB_1868	-	hypothetical protein
1821	 59.72	0	1952458..1952673	+	71	86609325	-	CYB_1869	-	hypothetical protein
1822	 59.06	0	1952698..1953552	-	284	86609326	-	CYB_1870	-	putative ABC transporter
1823	 61.40	0	1953693..1954718	-	341	86609327	-	CYB_1871	-	drug exporter ABC transporter ATP-binding protein
1824	 55.91	0	1954839..1956056	-	405	86609328	-	CYB_1872	-	ISSoc1, transposase
1825	 59.36	0	1956264..1957358	+	364	86609329	-	CYB_1873	-	hypothetical protein
1826	 60.60	0	1957778..1958914	-	378	86609330	cefD	CYB_1874	-	isopenicillin N-epimerase
1827	 52.09	-1	1959185..1960810	-	541	86609331	prfC	CYB_1875	-	peptide chain release factor 3
1828	 60.00	0	1961105..1961839	-	244	86609332	-	CYB_1876	-	hypothetical protein
1829	 59.30	0	1961940..1962740	-	266	86609333	-	CYB_1877	-	CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
1830	 60.84	0	1962899..1964065	-	388	86609334	aspC	CYB_1878	-	aspartate aminotransferase
1831	 59.89	0	1964141..1964701	-	186	86609335	-	CYB_1879	-	hypothetical protein
1832	 59.87	0	1964805..1965716	-	303	86609336	-	CYB_1880	-	putative permease
1833	 58.52	0	1965810..1966484	-	224	86609337	-	CYB_1881	-	peptide/opine/nickel uptake ABC transporter ATP-binding protein
1834	 61.51	0	1966471..1967400	-	309	86609338	-	CYB_1882	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein
1835	 58.72	0	1967405..1968298	-	297	86609339	-	CYB_1883	-	peptide/opine/nickel ABC transporter permease
1836	 56.59	0	1968295..1969296	-	333	86609340	-	CYB_1884	-	peptide/opine/nickel ABC transporter permease
1837	 56.03	0	1969281..1970906	-	541	86609341	-	CYB_1885	-	peptide/nickel/opine uptake ABC transporter periplasmic substrate-binding protein
1838	 58.68	0	1971812..1974076	+	754	86609342	metE	CYB_1886	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1839	 62.01	0	1974254..1974940	-	228	86609343	ftsE	CYB_1887	-	cell division ATP-binding protein FtsE
1840	 62.53	0	1975134..1975883	-	249	86609344	-	CYB_1888	-	WecB/TagA/CpsF family glycosyl transferase
1841	 60.06	0	1976131..1976796	+	221	86609345	-	CYB_1889	-	Tat pathway signal sequence domain-containing protein
1842	 58.74	0	1976926..1977417	+	163	86609346	-	CYB_1890	-	plastocyanin/azurin family copper binding protein
1843	 59.84	0	1977427..1977939	+	170	86609347	-	CYB_1891	-	hypothetical protein
1844	 62.88	+1	1977945..1978208	-	87	86609348	-	CYB_1892	-	S4 domain-containing protein
1845	 61.40	0	1978196..1979581	-	461	86609349	-	CYB_1893	-	aldehyde dehydrogenase family protein
1846	 61.44	0	1979708..1980988	-	426	86609350	-	CYB_1894	-	carboxylesterase
1847	 61.11	0	1981377..1982510	-	377	86609351	sasA	CYB_1895	-	adaptive-response sensory kinase
1848	 62.69	+1	1982809..1983009	-	66	86609352	-	CYB_1896	-	hypothetical protein
1849	 58.99	0	1983178..1983828	+	216	86609353	-	CYB_1898	-	ABC transporter, ATP-binding protein
1850	 61.83	0	1983819..1984997	-	392	86609354	-	CYB_1897	-	M23B family peptidase
1851	 61.20	0	1985630..1986343	+	237	86609355	eda	CYB_1899	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
1852	 58.13	0	1986369..1986860	+	163	86609356	-	CYB_1900	-	hypothetical protein
1853	 61.97	0	1986964..1987389	+	141	86609357	dgkA	CYB_1901	-	diacylglycerol kinase
1854	 60.84	0	1987414..1988340	-	308	86609358	thrB	CYB_1902	-	homoserine kinase
1855	 59.63	0	1988656..1989891	+	411	86609359	-	CYB_1903	-	arsenite-antimonite (ArsAB) efflux family protein
1856	 59.26	0	1989976..1990704	+	242	86609360	-	CYB_1904	-	short chain dehydrogenase/reductase family oxidoreductase
1857	 57.29	0	1990709..1990900	+	63	86609361	-	CYB_1906	-	hypothetical protein
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.