IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. JA-2-3B'a(2-13)



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.48 STD DEV: 4.07
Synechococcus sp. JA-2-3B'a(2-13), complete genome - 1..3046682
2862 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1188	 57.89	0	1262126..1262524	+	132	86608692	-	CYB_1216	-	hypothetical protein
1189	 61.77	0	1262530..1263285	+	251	86608693	trmD	CYB_1217	-	tRNA (guanine-N(1)-)-methyltransferase
1190	 62.43	0	1263289..1263666	+	125	86608694	-	CYB_1218	-	hypothetical protein
1191	 54.21	-1	1263770..1264042	+	90	86608695	secE	CYB_1219	-	preprotein translocase subunit SecE
1192	 59.01	0	1264105..1264770	+	221	86608696	nusG	CYB_1220	-	transcription antitermination protein NusG
1193	 58.92	0	1264780..1265205	+	141	86608697	rplK	CYB_1221	-	50S ribosomal protein L11
1194	 58.65	0	1265312..1266022	+	236	86608698	rplA	CYB_1222	-	50S ribosomal protein L1
1195	 59.75	0	1266321..1266884	+	187	86608699	rplJ	CYB_1223	-	50S ribosomal protein L10
1196	 58.39	0	1266950..1267360	+	136	86608700	rplL	CYB_1224	-	50S ribosomal protein L7/L12
1197	 58.23	0	1267418..1267654	-	78	86608701	-	CYB_1225	-	hypothetical protein
1198	 57.93	0	1267757..1268992	+	411	86608702	-	CYB_1227	-	ISSoc1, transposase
1199	 55.67	0	1268972..1269817	-	281	86608703	-	CYB_1226	-	Rieske family iron-sulfur cluster-binding protein
1200	 59.71	0	1270032..1271426	+	464	86608704	-	CYB_1228	-	TonB family protein
1201	 55.38	0	1271496..1271681	-	61	86608705	rpsU	CYB_1229	-	30S ribosomal protein S21
1202	 62.70	+1	1272036..1273322	-	428	86608706	-	CYB_1230	-	trypsin domain-containing lipoprotein
1203	 60.46	0	1273448..1274140	+	230	86608707	-	CYB_1231	-	putative partition protein A
1204	 59.18	0	1274137..1274430	+	97	86608708	-	CYB_1232	-	hypothetical protein
1205	 63.02	+1	1274682..1275860	+	392	86608709	dxr	CYB_1233	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1206	 60.77	0	1275920..1277683	+	587	86608710	-	CYB_1234	-	heavy metal ABC transporter (HMT) family permease/ATP-binding protein
1207	 64.71	+1	1277744..1279276	+	510	86608711	murE	CYB_1235	-	UDP-N-acetylmuramyl-tripeptide synthetase
1208	 62.21	0	1279279..1280466	-	395	86608712	carA	CYB_1236	-	carbamoyl phosphate synthase small subunit
1209	 55.09	0	1280528..1281391	-	287	86608713	-	CYB_1237	-	type IV pilin, putative
1210	 56.87	0	1281432..1282544	-	370	86608714	-	CYB_1238	-	type IV pilin, putative
1211	 58.73	0	1282595..1283350	-	251	86608715	-	CYB_1239	-	type IV pilin, putative
1212	 60.26	0	1283415..1290932	-	2505	86608716	-	CYB_1240	-	hypothetical protein
1213	 59.17	0	1290942..1291061	-	39	86608717	-	CYB_1241	-	hypothetical protein
1214	 62.48	0	1291088..1291684	-	198	86608718	-	CYB_1242	-	DNA-binding response regulator
1215	 62.18	0	1291789..1292412	-	207	86608719	-	CYB_1243	-	pentapeptide repeat-containing protein
1216	 60.71	0	1292499..1293338	-	279	86608720	mutM	CYB_1244	-	formamidopyrimidine-DNA glycosylase
1217	 53.78	-1	1293385..1293609	-	74	86608721	psaE	CYB_1245	-	photosystem I reaction center subunit IV
1218	 62.82	+1	1293729..1294613	+	294	86608722	-	CYB_1246	-	penicillin-binding protein
1219	 55.56	0	1294730..1294882	+	50	86608723	-	CYB_1247	-	CAB/ELIP/HLIP family protein
1220	 61.60	0	1295153..1296829	-	558	86608724	nadE	CYB_1248	-	NAD+ synthetase
1221	 54.53	0	1296879..1297727	-	282	86608725	-	CYB_1249	-	sensor histidine kinase
1222	 51.33	-1	1297936..1300380	-	814	86608726	-	CYB_1250	-	sensory box protein
1223	 55.13	0	1300591..1302462	-	623	86608727	uvrC	CYB_1251	-	excinuclease ABC subunit C
1224	 54.17	-1	1303083..1303178	+	31	86608728	-	CYB_1252	-	hypothetical protein
1225	 61.85	0	1303586..1308193	+	1535	86608729	gltS	CYB_1253	-	ferredoxin-dependent glutamate synthase
1226	 57.42	0	1308298..1309389	+	363	86608730	acsF	CYB_1254	-	magnesium-protoporphyrin IX monomethyl ester cyclase
1227	 62.67	+1	1309437..1310912	+	491	86608731	-	CYB_1255	-	hypothetical protein
1228	 63.20	+1	1310954..1312915	+	653	86608732	-	CYB_1256	-	TPR domain-containing protein
1229	 59.43	0	1313018..1314289	+	423	86608733	-	CYB_1257	-	chromate transporter
1230	 58.16	0	1314364..1315503	-	379	86608734	lgt-1	CYB_1258	-	prolipoprotein diacylglyceryl transferase
1231	 57.26	0	1315983..1316333	+	116	86608735	-	CYB_1260	-	hypothetical protein
1232	 57.12	0	1316313..1317548	-	411	86608736	-	CYB_1259	-	ISSoc1, transposase
1233	 60.55	0	1317828..1319036	+	402	86608737	-	CYB_1261	-	coenzyme F420 hydrogenase/dehydrogenase family protein
1234	 63.58	+1	1319040..1320236	-	398	86608738	-	CYB_1262	-	aspartate aminotransferase
1235	 61.09	0	1320403..1321782	+	459	86608739	engA	CYB_1263	-	GTP-binding protein EngA
1236	 59.57	0	1321806..1322270	+	154	86608740	smpB	CYB_1264	-	SsrA-binding protein
1237	 58.21	0	1322410..1323615	+	401	86608741	-	CYB_1265	-	hypothetical protein
1238	 58.37	0	1323627..1324229	-	200	86608742	-	CYB_1266	-	glutathione S-transferase
1239	 58.16	0	1324328..1325515	-	395	86608743	-	CYB_1267	-	Rieske family iron-sulfur cluster-binding protein
1240	 62.89	+1	1325696..1326781	-	361	86608744	era	CYB_1268	-	GTP-binding protein Era
1241	 60.84	0	1327064..1328677	-	537	86608745	-	CYB_1269	-	SpoIID/LytB domain-containing protein
1242	 61.94	0	1328938..1329297	+	119	86608746	-	CYB_1270	-	hypothetical protein
1243	 60.47	0	1329387..1330193	+	268	86608747	-	CYB_1271	-	oxidoreductase, molybdopterin-binding subunit
1244	 55.86	0	1330656..1331201	+	181	86608748	-	CYB_1272	-	type IV pilin, putative
1245	 55.17	0	1331510..1331944	+	144	86608749	-	CYB_1274	-	hypothetical protein
1246	 42.89	-2	1332151..1332558	-	135	86608750	-	CYB_1275	-	ISSoc13, transposase orfB
1247	 44.97	-2	1332516..1332893	-	125	86608751	-	CYB_1276	-	ISSoc13, transposase orfA
1248	 50.76	-1	1333326..1333652	+	108	86608752	-	CYB_1277	-	hypothetical protein
1249	 53.40	-1	1333697..1334005	-	102	86608753	-	CYB_1278	-	NADH dehydrogenase subunit K
1250	 57.14	0	1334083..1334691	-	202	86608754	-	CYB_1279	-	NADH dehydrogenase subunit J
1251	 59.28	0	1334811..1336124	-	437	86608755	-	CYB_1280	-	hypothetical protein
1252	 61.34	0	1336294..1337025	-	243	86608756	-	CYB_1281	-	biotin/lipoate A/B protein ligase family protein
1253	 56.13	0	1337043..1337507	-	154	86608757	-	CYB_1282	-	hypothetical protein
1254	 61.64	0	1337729..1338484	+	251	86608758	mtnN	CYB_1283	-	MTA/SAH nucleosidase
1255	 58.79	0	1338555..1339532	-	325	86608759	-	CYB_1284	-	nuclease, putative
1256	 59.89	0	1339837..1340559	-	240	86608760	-	CYB_1285	-	hypothetical protein
1257	 57.32	0	1340741..1342003	+	420	86608761	-	CYB_1286	-	hypothetical protein
1258	 61.56	0	1342377..1343864	+	495	86608762	-	CYB_1287	-	hypothetical protein
1259	 62.04	0	1343931..1344449	+	172	86608763	-	CYB_1288	-	hypothetical protein
1260	 62.18	0	1344744..1345835	+	363	86608764	lpxD	CYB_1289	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1261	 46.83	-2	1345865..1348027	-	720	86608765	-	CYB_1290	-	FkbM family methyltransferase
1262	 65.77	+1	1348354..1348464	+	36	86608766	-	CYB_1291	-	hypothetical protein
1263	 58.23	0	1348755..1349453	+	232	86608767	-	CYB_1292	-	hypothetical protein
1264	 48.68	-2	1349487..1352222	-	911	86608768	-	CYB_1293	-	macrocin-O-methyltransferase domain-containing protein
1265	 48.15	-2	1352304..1355057	-	917	86608769	-	CYB_1294	-	macrocin-O-methyltransferase domain-containing protein
1266	 51.41	-1	1355062..1357113	-	683	86608770	-	CYB_1295	-	FkbM family methyltransferase
1267	 53.79	-1	1357129..1357959	-	276	86608771	-	CYB_1296	-	hypothetical protein
1268	 54.93	0	1358130..1359347	-	405	86608772	-	CYB_1297	-	ISSoc1, transposase
1269	 61.14	0	1359648..1361204	-	518	86608773	crtH	CYB_1298	-	carotenoid isomerase
1270	 59.41	0	1361408..1362427	+	339	86608774	-	CYB_1300	-	Rieske family iron-sulfur cluster-binding protein
1271	 60.67	0	1362410..1363360	-	316	86608775	potB	CYB_1299	-	spermidine/putrescine ABC transporter, permease protein
1272	 60.95	0	1363354..1364508	-	384	86608776	potA	CYB_1301	-	spermidine/putrescine ABC transporter, ATP-binding protein
1273	 61.05	0	1364733..1365587	-	284	86608777	-	CYB_1302	-	leucine-rich repeat-containing protein
1274	 60.11	0	1365814..1366362	-	182	86608778	-	CYB_1303	-	hypothetical protein
1275	 62.22	0	1366407..1368746	-	779	86608779	dnaX	CYB_1304	-	DNA polymerase III, subunits gamma and tau
1276	 60.00	0	1368869..1369348	-	159	86608780	-	CYB_1305	-	hypothetical protein
1277	 61.51	0	1369405..1370121	-	238	86608781	coaE	CYB_1306	-	dephospho-CoA kinase
1278	 61.72	0	1370139..1371857	-	572	86608782	-	CYB_1307	-	alpha-isopropylmalate/homocitrate synthase family transferase
1279	 55.38	0	1371847..1372218	-	123	86608783	-	CYB_1308	-	hypothetical protein
1280	 60.69	0	1372687..1373607	+	306	86608784	-	CYB_1309	-	hypothetical protein
1281	 61.04	0	1373768..1375492	+	574	86608785	-	CYB_1310	-	hypothetical protein
1282	 53.55	-1	1375774..1376055	+	93	86608786	-	CYB_1311	-	hypothetical protein
1283	 65.13	+1	1376080..1376469	-	129	86608787	-	CYB_1312	-	putative lipoprotein
1284	 57.44	0	1376501..1377226	-	241	86608788	-	CYB_1313	-	hypothetical protein
1285	 57.19	0	1377268..1377837	-	189	86608789	-	CYB_1314	-	hypothetical protein
1286	 57.94	0	1377927..1378178	-	83	86608790	-	CYB_1315	-	hypothetical protein
1287	 56.23	0	1378426..1378770	-	114	86608791	-	CYB_1316	-	ArsR family transcriptional regulator
58.48	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.