IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1875	 54.50	0	1735375..1735785	-	136	78213430	-	Syncc9605_1913	-	cAMP phosphodiesterase class-II
1876	 58.17	0	1735880..1736479	-	199	78213431	-	Syncc9605_1914	-	hypothetical protein
1877	 59.06	0	1736504..1737739	+	411	78213432	-	Syncc9605_1915	-	adaptive-response sensory kinase
1878	 57.28	0	1737986..1738507	-	173	78213433	-	Syncc9605_1916	-	hypothetical protein
1879	 59.36	0	1738669..1739859	+	396	78213434	-	Syncc9605_1917	-	ferredoxin--NADP reductase (FNR)
1880	 62.27	0	1740028..1741551	+	507	78213435	-	Syncc9605_1918	-	glucose-6-phosphate 1-dehydrogenase
1881	 65.97	+1	1741610..1742896	+	428	78213436	-	Syncc9605_1919	-	glucose 6-phosphate dehydrogenase effector OpcA
1882	 65.97	+1	1742911..1744338	+	475	78213437	-	Syncc9605_1920	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
1883	 69.05	+1	1744335..1744586	+	83	78213438	-	Syncc9605_1921	-	acylphosphatase
1884	 62.40	0	1744687..1745061	+	124	78213439	-	Syncc9605_1922	-	hypothetical protein
1885	 65.50	0	1745208..1745894	+	228	78213440	-	Syncc9605_1923	-	cytochrome c biogenesis protein trans
1886	 65.84	+1	1745896..1747347	-	483	78213441	-	Syncc9605_1924	-	exodeoxyribonuclease V
1887	 63.94	0	1747344..1747856	-	170	78213442	-	Syncc9605_1925	-	hypothetical protein
1888	 63.97	0	1747853..1748743	-	296	78213443	-	Syncc9605_1926	-	farnesyl-diphosphate synthase
1889	 62.98	0	1748784..1749461	-	225	78213444	-	Syncc9605_1927	-	hypothetical protein
1890	 65.53	0	1749470..1750351	-	293	78213445	-	Syncc9605_1928	-	methenyltetrahydrofolate cyclohydrolase
1891	 64.75	0	1750422..1752512	+	696	78213446	-	Syncc9605_1929	-	metal dependent phosphohydrolase
1892	 59.00	0	1752522..1752782	-	86	78213447	-	Syncc9605_1930	-	hypothetical protein
1893	 66.67	+1	1752766..1753353	-	195	78213448	-	Syncc9605_1931	-	ribosomal large subunit pseudouridine synthase A
1894	 61.76	0	1753380..1753868	-	162	78213449	-	Syncc9605_1932	-	hypothetical protein
1895	 64.03	0	1753950..1754252	-	100	78213450	-	Syncc9605_1933	-	hypothetical protein
1896	 63.05	0	1754252..1754500	-	82	78213451	-	Syncc9605_1934	-	hypothetical protein
1897	 61.07	0	1754591..1755037	+	148	78213452	-	Syncc9605_1935	-	hypothetical protein
1898	 60.95	0	1755108..1755317	+	69	78213453	-	Syncc9605_1936	-	hypothetical protein
1899	 60.98	0	1755360..1755605	-	81	78213454	-	Syncc9605_1937	-	hypothetical protein
1900	 62.42	0	1755919..1756743	-	274	78213455	-	Syncc9605_1938	-	putative permease protein of sugar ABC transporter
1901	 63.83	0	1756754..1758376	-	540	78213456	-	Syncc9605_1939	-	2-isopropylmalate synthase
1902	 66.10	+1	1758486..1760081	+	531	78213457	-	Syncc9605_1940	-	hypothetical protein
1903	 61.74	0	1760196..1761434	-	412	78213458	-	Syncc9605_1941	-	lycopene cyclase (CrtL-type)
1904	 64.36	0	1761437..1764034	-	865	78213459	-	Syncc9605_1942	-	DNA gyrase subunit A
1905	 65.56	0	1764126..1764668	+	180	78213460	-	Syncc9605_1943	-	hypothetical protein
1906	 65.64	0	1764732..1765895	+	387	78213461	-	Syncc9605_1944	-	inositol-5-monophosphate dehydrogenase
1907	 56.80	0	1766025..1766399	+	124	78213462	-	Syncc9605_1945	-	thioredoxin
1908	 62.31	0	1766426..1767067	+	213	78213463	-	Syncc9605_1946	-	imidazole glycerol phosphate synthase subunit hisH
1909	 63.61	0	1767064..1767684	+	206	78213464	-	Syncc9605_1947	-	hypothetical protein
1910	 59.83	0	1767614..1767730	-	38	109150035	petG	Syncc9605_1947a	-	cytochrome b6-f complex subunit PetG
1911	 63.77	0	1767787..1768200	+	137	78213465	-	Syncc9605_1948	-	cytochrome cM
1912	 67.76	+1	1768225..1768956	+	243	78213466	-	Syncc9605_1949	-	RNA methyltransferase TrmH, group 1
1913	 64.31	0	1768985..1770130	+	381	78213467	-	Syncc9605_1950	-	beta-lactamase family protein
1914	 66.30	+1	1770127..1771479	+	450	78213468	-	Syncc9605_1951	-	hypothetical protein
1915	 65.56	0	1771500..1772588	+	362	78213469	-	Syncc9605_1952	-	protoporphyrin IX magnesium-chelatase
1916	 63.23	0	1772607..1773071	+	154	78213470	-	Syncc9605_1953	-	Holliday junction endonuclease RuvC
1917	 67.76	+1	1773068..1773616	+	182	78213471	-	Syncc9605_1954	-	hypothetical protein
1918	 61.26	0	1773628..1774071	+	147	78213472	-	Syncc9605_1955	-	hypothetical protein
1919	 64.30	0	1774079..1774501	+	140	78213473	-	Syncc9605_1956	-	SufE protein
1920	 64.76	0	1774589..1775896	+	435	78213474	-	Syncc9605_1957	-	homoserine dehydrogenase
1921	 58.62	0	1776060..1776233	+	57	78213475	-	Syncc9605_1958	-	hypothetical protein
1922	 64.30	0	1776274..1777881	+	535	78213476	-	Syncc9605_1959	-	ABC transporter substrate-binding protein
1923	 64.80	0	1777881..1778900	+	339	78213477	-	Syncc9605_1960	-	putative ABC transporter, oligopeptides
1924	 63.81	0	1778894..1780468	-	524	78213478	-	Syncc9605_1961	-	hypothetical protein
1925	 62.01	0	1780606..1781808	+	400	78213479	-	Syncc9605_1962	-	major facilitator superfamily multidrug-efflux transporter
1926	 43.99	-2	1782133..1782723	+	196	78213480	-	Syncc9605_1963	-	hypothetical protein
1927	 58.42	0	1782736..1783827	-	363	78213481	-	Syncc9605_1964	-	translation-associated GTPase
1928	 61.10	0	1783879..1785045	+	388	78213482	-	Syncc9605_1965	-	secretion protein HlyD
1929	 63.73	0	1785070..1788030	+	986	78213483	-	Syncc9605_1966	-	DNA polymerase I
1930	 62.28	0	1788077..1789558	+	493	78213484	-	Syncc9605_1967	-	cysteinyl-tRNA synthetase
1931	 57.61	0	1789579..1789821	+	80	78213485	-	Syncc9605_1968	-	hypothetical protein
1932	 64.77	0	1789843..1791162	-	439	78213486	-	Syncc9605_1969	-	sodium-dependent transporter
1933	 63.86	0	1791242..1792489	+	415	78213487	-	Syncc9605_1970	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1934	 52.07	-1	1792492..1792854	+	120	78213488	-	Syncc9605_1971	-	putative ferredoxin like protein
1935	 57.68	0	1793076..1794221	+	381	78213489	-	Syncc9605_1972	-	Delta(12)-fatty acid dehydrogenase
1936	 65.88	+1	1794257..1795276	-	339	78213490	-	Syncc9605_1973	-	hypothetical protein
1937	 63.22	0	1795288..1796709	-	473	78213491	-	Syncc9605_1974	-	putative nicotinamide nucleotide transhydrogenase, subunit beta
1938	 60.27	0	1796709..1797005	-	98	78213492	-	Syncc9605_1975	-	putative nicotinamide nucleotide transhydrogenase, subunit alpha 2 (A2)
1939	 64.14	0	1797005..1798153	-	382	78213493	-	Syncc9605_1976	-	NAD(P)(+) transhydrogenase (AB-specific)
1940	 62.00	0	1798270..1798848	+	192	78213494	-	Syncc9605_1977	-	hypothetical protein
1941	 61.02	0	1798882..1799058	-	58	78213495	-	Syncc9605_1978	-	hypothetical protein
1942	 64.45	0	1799305..1800612	+	435	78213496	-	Syncc9605_1979	-	hypothetical protein
1943	 55.87	0	1800643..1800957	+	104	78213497	-	Syncc9605_1980	-	hypothetical protein
1944	 61.53	0	1801065..1802447	+	460	78213498	-	Syncc9605_1981	-	thioredoxin reductase
1945	 65.19	0	1802460..1802729	-	89	78213499	-	Syncc9605_1982	-	translation initiation factor 1
1946	 62.77	0	1802886..1803578	+	230	78213500	-	Syncc9605_1983	-	pseudouridine synthase, Rsu
1947	 62.98	0	1803526..1804338	-	270	78213501	-	Syncc9605_1984	-	methyltransferase-like
1948	 61.57	0	1804338..1804553	-	71	78213502	-	Syncc9605_1985	-	hypothetical protein
1949	 60.85	0	1804607..1805569	-	320	78213503	-	Syncc9605_1986	-	putative chaperon-like protein for quinone binding in photosystem II
1950	 54.90	0	1805626..1805727	-	33	109150033	petM	Syncc9605_1986a	-	cytochrome b6-f complex subunit PetM
1951	 66.40	+1	1805756..1806886	-	376	78213504	-	Syncc9605_1987	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
1952	 68.74	+1	1806924..1807889	+	321	78213505	-	Syncc9605_1988	-	alpha/beta hydrolase superfamily protein
1953	 62.90	0	1807861..1808391	+	176	78213506	ilvH	Syncc9605_1989	-	acetolactate synthase 3 regulatory subunit
1954	 62.35	0	1808394..1809065	-	223	78213507	-	Syncc9605_1990	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
1955	 61.68	0	1809070..1809630	-	186	78213508	-	Syncc9605_1991	-	photosystem I assembly protein Ycf4
1956	 60.23	0	1809795..1810850	+	351	78213509	-	Syncc9605_1992	-	photosystem II D2 protein (photosystem q(a) protein)
1957	 61.48	0	1810834..1812222	+	462	78213510	-	Syncc9605_1993	-	photosystem II 44 kDa subunit reaction center protein
1958	 64.13	0	1812332..1813474	+	380	78213511	-	Syncc9605_1994	-	cystathionine gamma-synthase
1959	 64.80	0	1813471..1814967	+	498	78213512	-	Syncc9605_1995	-	cystathionine gamma-synthase
1960	 61.70	0	1815022..1816008	+	328	78213513	-	Syncc9605_1996	-	cysteine synthase
1961	 50.37	-1	1816149..1816694	+	181	78213514	-	Syncc9605_1997	-	hypothetical protein
1962	 44.94	-2	1816751..1817353	+	200	78213515	-	Syncc9605_1998	-	hypothetical protein
1963	 47.04	-1	1817373..1819481	-	702	78213516	-	Syncc9605_1999	-	hypothetical protein
1964	 47.43	-1	1819491..1820015	-	174	78213517	-	Syncc9605_2000	-	hypothetical protein
1965	 50.12	-1	1820018..1822507	-	829	78213518	-	Syncc9605_2001	-	heavy metal translocating P-type ATPase
1966	 47.95	-1	1822558..1822899	-	113	78213519	-	Syncc9605_2002	-	hypothetical protein
1967	 40.09	-2	1822973..1824142	+	389	78213520	-	Syncc9605_2003	-	hypothetical protein
1968	 48.22	-1	1824441..1824749	-	102	78213521	-	Syncc9605_2004	-	hypothetical protein
1969	 40.72	-2	1824883..1825545	-	220	78213522	-	Syncc9605_2005	-	membrane protein-like
1970	 41.19	-2	1825549..1826961	-	470	78213523	-	Syncc9605_2006	-	hypothetical protein
1971	 53.24	0	1827095..1827742	+	215	78213524	-	Syncc9605_2007	-	carbonic anhydrase-like
1972	 62.13	0	1827727..1828827	-	366	78213525	-	Syncc9605_2008	-	queuosine biosynthesis protein
1973	 64.79	0	1828840..1830171	-	443	78213526	-	Syncc9605_2009	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1974	 60.86	0	1830228..1830692	-	154	78213527	-	Syncc9605_2010	-	hypothetical protein
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.