IslandPathversion 1.0

IslandPath Analysis: Synechococcus sp. CC9605



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.39 STD DEV: 6.29
Synechococcus sp. CC9605, complete genome - 1..2510659
2645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1163	 63.20	0	1112174..1113097	+	307	78212719	-	Syncc9605_1188	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
1164	 61.01	0	1113094..1113411	+	105	78212720	-	Syncc9605_1189	-	hypothetical protein
1165	 59.45	0	1113594..1114577	+	327	78212721	-	Syncc9605_1190	-	pyruvate dehydrogenase E1 beta subunit
1166	 61.00	0	1114583..1116064	+	493	78212722	secD	Syncc9605_1191	-	preprotein translocase subunit SecD
1167	 61.52	0	1116068..1117057	+	329	78212723	secF	Syncc9605_1192	-	preprotein translocase subunit SecF
1168	 56.00	0	1117050..1117274	+	74	78212724	-	Syncc9605_1193	-	hypothetical protein
1169	 54.85	0	1117271..1117507	-	78	78212725	-	Syncc9605_1194	-	hypothetical protein
1170	 61.62	0	1117951..1118940	-	329	78212726	-	Syncc9605_1195	-	hypothetical protein
1171	 58.70	0	1118937..1120016	-	359	78212727	-	Syncc9605_1196	-	hypothetical protein
1172	 55.99	0	1120013..1120396	-	127	78212728	-	Syncc9605_1197	-	photosystem II reaction center protein Psb28
1173	 62.84	0	1120427..1121470	-	347	78212729	-	Syncc9605_1198	-	tRNA 2-selenouridine synthase
1174	 60.08	0	1121501..1122229	+	242	78212730	-	Syncc9605_1199	-	hypothetical protein
1175	 62.10	0	1122283..1122720	+	145	78212731	-	Syncc9605_1200	-	putative anti-sigma regulatory factor (serine/threonine protein kinase)
1176	 60.39	0	1122680..1122934	-	84	78212732	-	Syncc9605_1201	-	hypothetical protein
1177	 62.22	0	1122984..1123253	+	89	78212733	-	Syncc9605_1202	-	hypothetical protein
1178	 60.14	0	1123291..1123581	-	96	78212734	-	Syncc9605_1203	-	hypothetical protein
1179	 59.43	0	1123656..1124747	-	363	78212735	-	Syncc9605_1204	-	generic methyl-transferase
1180	 61.74	0	1124844..1126265	-	473	78212736	-	Syncc9605_1205	-	L-glutamine synthetase
1181	 60.95	0	1126472..1126996	+	174	78212737	-	Syncc9605_1206	-	phycobilisome core component-allophycocyanin beta-18 subunit
1182	 60.93	0	1127105..1128289	+	394	78212738	-	Syncc9605_1207	-	alanine-glyoxylate aminotransferase
1183	 62.48	0	1128261..1128785	-	174	78212739	-	Syncc9605_1208	-	tRNA-adenosine deaminase
1184	 63.33	0	1128805..1130214	+	469	78212740	-	Syncc9605_1209	-	pyridoxal-dependent decarboxylase family protein
1185	 62.77	0	1130335..1131924	-	529	78212741	-	Syncc9605_1210	-	small GTP-binding protein domain-containing protein
1186	 61.79	0	1131959..1132450	-	163	78212742	-	Syncc9605_1211	-	lipoprotein signal peptidase
1187	 65.61	0	1132447..1133016	-	189	78212743	-	Syncc9605_1212	-	BioY protein
1188	 62.72	0	1133073..1133300	+	75	78212744	-	Syncc9605_1213	-	hypothetical protein
1189	 65.63	0	1133297..1134553	-	418	78212745	-	Syncc9605_1214	-	Zn-dependent peptidase
1190	 62.15	0	1134550..1135833	-	427	78212746	-	Syncc9605_1215	-	Zn-dependent peptidase
1191	 62.50	0	1135852..1136595	+	247	78212747	-	Syncc9605_1216	-	phycocyanobilin:ferredoxin oxidoreductase
1192	 63.43	0	1136595..1137491	+	298	78212748	-	Syncc9605_1217	-	ABC transporter
1193	 60.60	0	1137488..1138657	+	389	78212749	-	Syncc9605_1218	-	DevC protein
1194	 61.21	0	1138657..1139334	+	225	78212750	-	Syncc9605_1219	-	ATPase
1195	 59.62	0	1139371..1139526	+	51	78212751	-	Syncc9605_1220	-	hypothetical protein
1196	 60.34	0	1139616..1140548	+	310	78212752	-	Syncc9605_1221	-	glycosyltransferase
1197	 61.79	0	1140679..1141395	+	238	161353762	rpsB	Syncc9605_1222	-	30S ribosomal protein S2
1198	 59.13	0	1141480..1142142	+	220	78212754	tsf	Syncc9605_1223	-	elongation factor Ts
1199	 60.96	0	1142148..1143269	+	373	78212755	-	Syncc9605_1224	-	hypothetical protein
1200	 62.81	0	1143302..1145740	+	812	78212756	-	Syncc9605_1225	-	ATP-dependent DNA helicase RecG
1201	 62.96	0	1145761..1146462	+	233	78212757	-	Syncc9605_1226	-	putative D-alanyl-D-alanine dipeptidase
1202	 61.90	0	1146426..1148168	-	580	78212758	-	Syncc9605_1227	-	sulfite reductase subunit beta
1203	 62.15	0	1148257..1150428	+	723	78212759	-	Syncc9605_1228	-	glycyl-tRNA synthetase, beta subunit
1204	 57.00	0	1150493..1151713	+	406	78212760	-	Syncc9605_1229	-	hypothetical protein
1205	 49.69	-1	1151881..1152198	+	105	78212761	-	Syncc9605_1230	-	hypothetical protein
1206	 56.31	0	1153110..1153814	-	234	78212762	-	Syncc9605_1231	-	hypothetical protein
1207	 55.56	0	1154027..1154467	-	146	78212763	-	Syncc9605_1232	-	hypothetical protein
1208	 56.11	0	1154464..1155183	-	239	78212764	-	Syncc9605_1233	-	hypothetical protein
1209	 50.70	-1	1155265..1155690	-	141	78212765	-	Syncc9605_1234	-	hypothetical protein
1210	 50.00	-1	1156267..1156512	-	81	78212766	-	Syncc9605_1235	-	hypothetical protein
1211	 59.74	0	1157204..1157434	-	76	78212767	-	Syncc9605_1236	-	hypothetical protein
1212	 57.89	0	1157498..1158169	-	223	78212768	-	Syncc9605_1237	-	hypothetical protein
1213	 50.62	-1	1158797..1159039	+	80	78212769	-	Syncc9605_1238	-	hypothetical protein
1214	 56.41	0	1159624..1159896	+	90	78212770	-	Syncc9605_1239	-	hypothetical protein
1215	 58.85	0	1159945..1161312	-	455	78212771	-	Syncc9605_1240	-	geranylgeranyl reductase
1216	 60.82	0	1161421..1162173	+	250	78212772	-	Syncc9605_1241	-	putative carboxypeptidase
1217	 64.14	0	1162170..1164701	+	843	78212773	-	Syncc9605_1242	-	putative peptidase U32 family protein
1218	 59.04	0	1164759..1166567	+	602	78212774	-	Syncc9605_1243	-	GTP-binding protein TypA
1219	 59.66	0	1166567..1166923	+	118	78212775	-	Syncc9605_1244	-	hypothetical protein
1220	 59.82	0	1166974..1167411	+	145	78212776	-	Syncc9605_1245	-	hypothetical protein
1221	 60.22	0	1167408..1168136	+	242	78212777	-	Syncc9605_1246	-	ATPase
1222	 56.85	0	1168136..1169296	+	386	78212778	-	Syncc9605_1247	-	permease
1223	 59.23	0	1169335..1170249	+	304	78212779	-	Syncc9605_1248	-	heme transporter
1224	 52.48	-1	1170279..1170842	-	187	78212780	-	Syncc9605_1249	-	hypothetical protein
1225	 46.81	-2	1171421..1171561	+	46	78212781	-	Syncc9605_1250	-	hypothetical protein
1226	 49.16	-1	1172131..1172427	+	98	78212782	-	Syncc9605_1251	-	hypothetical protein
1227	 58.04	0	1172560..1173243	-	227	78212783	-	Syncc9605_1252	-	ribulose-phosphate 3-epimerase
1228	 59.80	0	1173394..1174398	+	334	78212784	glpX	Syncc9605_1253	-	fructose 1,6-bisphosphatase II
1229	 59.28	0	1174430..1175728	+	432	78212785	hemA	Syncc9605_1254	-	glutamyl-tRNA reductase
1230	 55.40	0	1175850..1177145	+	431	78212786	glgC	Syncc9605_1255	-	glucose-1-phosphate adenylyltransferase
1231	 58.91	0	1177281..1178699	+	472	78212787	-	Syncc9605_1256	-	6-phosphogluconate dehydrogenase
1232	 64.29	0	1178711..1179424	+	237	78212788	-	Syncc9605_1257	-	6-phosphogluconolactonase
1233	 62.21	0	1179405..1179965	+	186	78212789	-	Syncc9605_1258	-	hypothetical protein
1234	 59.89	0	1179970..1180338	+	122	78212790	-	Syncc9605_1259	-	hypothetical protein
1235	 62.07	0	1180350..1182023	-	557	78212791	-	Syncc9605_1260	-	dihydroxy-acid dehydratase
1236	 61.29	0	1182068..1182346	-	92	78212792	-	Syncc9605_1261	-	hypothetical protein
1237	 62.54	0	1182383..1182988	-	201	78212793	-	Syncc9605_1262	-	putative uracil phosphoribosyltransferase
1238	 58.63	0	1183044..1183553	+	169	78212794	-	Syncc9605_1263	-	hypothetical protein
1239	 62.10	0	1183559..1184674	+	371	78212795	-	Syncc9605_1264	-	putative cobalamin synthesis protein
1240	 62.98	0	1184611..1185477	-	288	78212796	-	Syncc9605_1265	-	hypothetical protein
1241	 57.45	0	1185564..1186442	+	292	78212797	-	Syncc9605_1266	-	hypothetical protein
1242	 41.55	-2	1186421..1186639	+	72	78212798	-	Syncc9605_1267	-	hypothetical protein
1243	 58.36	0	1186650..1187636	-	328	78212799	-	Syncc9605_1268	-	chlorophyll synthase / NADPH-protochlorophyllide oxidoreductase
1244	 57.50	0	1187608..1188414	-	268	78212800	-	Syncc9605_1269	-	inner membrane protein
1245	 59.59	0	1188483..1189061	+	192	78212801	-	Syncc9605_1270	-	hypothetical protein
1246	 59.91	0	1189061..1189756	+	231	78212802	-	Syncc9605_1271	-	putative short-chain dehydrogenase family protein
1247	 55.66	0	1189787..1190113	+	108	78212803	-	Syncc9605_1272	-	hypothetical protein
1248	 59.19	0	1190110..1190577	+	155	78212804	-	Syncc9605_1273	-	hypothetical protein
1249	 56.12	0	1190561..1190977	-	138	78212805	-	Syncc9605_1274	-	hypothetical protein
1250	 47.53	-1	1191494..1191979	+	161	78212806	-	Syncc9605_1276	-	hypothetical protein
1251	 61.49	0	1192554..1194908	-	784	78212807	-	Syncc9605_1277	-	ribonucleotide reductase (class II)
1252	 61.23	0	1195003..1195683	+	226	78212808	-	Syncc9605_1278	-	hypothetical protein
1253	 59.08	0	1195690..1197336	+	548	78212809	prfC	Syncc9605_1279	-	peptide chain release factor 3
1254	 59.01	0	1197406..1197627	+	73	78212810	-	Syncc9605_1280	-	hypothetical protein
1255	 62.64	0	1197669..1198364	+	231	78212811	-	Syncc9605_1281	-	hypothetical protein
1256	 60.89	0	1198368..1199285	-	305	78212812	-	Syncc9605_1282	-	chaperonin HSP33
1257	 63.38	0	1199300..1199938	-	212	78212813	-	Syncc9605_1283	-	ATPase
1258	 56.22	0	1199980..1200429	+	149	78212814	-	Syncc9605_1284	-	hypothetical protein
1259	 61.61	0	1200422..1201153	+	243	78212815	-	Syncc9605_1285	-	hypothetical protein
1260	 61.34	0	1201143..1201574	-	143	78212816	-	Syncc9605_1286	-	hypothetical protein
1261	 62.78	0	1201634..1202380	+	248	78212817	-	Syncc9605_1287	-	hypothetical protein
1262	 59.60	0	1202581..1203132	-	183	78212818	-	Syncc9605_1288	-	DNA-directed RNA polymerase specialized sigma subunit-like
59.39	MEAN

6.29	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.