IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
643	 46.64	0	712931..713779	+	282	16329812	-	slr1699	-	hypothetical protein
644	 47.90	0	713774..714178	-	134	16329813	-	sll1584	-	hypothetical protein
645	 49.73	0	714465..716153	-	562	16329814	lig	sll1583	-	DNA ligase
646	 35.75	-2	716309..719665	-	1118	16329815	-	sll1582	-	hypothetical protein
647	 49.24	0	719733..721247	-	504	16329816	gumB	sll1581	-	GumB protein
648	 52.65	0	721429..721692	+	87	16329817	-	ssr2843	-	hypothetical protein
649	 51.72	0	721724..722479	+	251	16329818	-	slr1702	-	hypothetical protein
650	 45.55	0	722570..723862	+	430	16329819	serS	slr1703	-	seryl-tRNA synthetase
651	 48.41	0	724094..724345	-	83	16329820	cpcD	ssl3093	-	phycocyanin associated linker protein
652	 47.95	0	724492..725367	-	291	16329821	cpcC	sll1580	-	phycocyanin associated linker protein
653	 51.46	0	725413..726234	-	273	16329822	cpcC	sll1579	-	phycocyanin associated linker protein
654	 50.72	0	726349..726837	-	162	16329823	cpcA	sll1578	-	phycocyanin a subunit
655	 53.37	+1	726948..727466	-	172	16329824	cpcB	sll1577	-	phycocyanin b subunit
656	 48.40	0	728271..728489	+	72	16329825	-	ssr2848	-	hypothetical protein
657	 52.61	0	728660..729484	+	274	16329826	-	slr1704	-	hypothetical protein
658	 49.72	0	730108..731358	-	416	16329827	-	sll1575	-	serine/threonine protein kinase
659	 52.56	0	731363..731674	-	103	16329828	-	sll1574	-	hypothetical protein
660	 49.84	0	731748..732062	-	104	16329829	-	sll1573	-	hypothetical protein
661	 52.25	0	732418..733284	+	288	16329830	aspA	slr1705	-	aspartoacylase
662	 51.65	0	733401..734432	+	343	16329831	dfrA	slr1706	-	dihydroflavonol 4-reductase
663	 51.79	0	734665..734859	+	64	16329832	-	ssr2857	-	hypothetical protein
664	 55.26	+1	734985..736220	+	411	16329833	-	slr1708	-	lysostaphin
665	 46.11	0	736435..737811	-	458	16329834	dnaE	sll1572	-	DNA polymerase III subunit alpha
666	 44.90	0	737867..738808	-	313	16329835	-	sll1571	-	hypothetical protein
667	 51.91	0	738909..739640	-	243	16329836	-	sll1570	-	hypothetical protein
668	 51.78	0	739682..741931	+	749	16329837	mrcB	slr1710	-	penicillin-binding protein 1B
669	 46.14	0	742080..742688	-	202	16329838	-	sll1568	-	fibrillin
670	 49.00	0	742780..744732	-	650	16329839	-	sll1927	-	ABC transporter
671	 44.98	0	744810..745247	-	145	16329840	-	sll1926	-	hypothetical protein
672	 55.34	+1	745339..746124	+	261	16329841	-	slr2005	-	hypothetical protein
673	 49.65	0	746303..747019	-	238	16329842	-	sll1925	-	hypothetical protein
674	 46.96	0	747234..747578	+	114	16329843	-	slr2006	-	putative monovalent cation/H+ antiporter subunit C
675	 49.59	0	747575..749038	+	487	16329844	ndhD	slr2007	-	putative monovalent cation/H+ antiporter subunit D
676	 44.16	0	749150..749500	+	116	16329845	-	slr2008	-	putative monovalent cation/H+ antiporter subunit C
677	 49.06	0	749550..751037	+	495	16329846	ndhF	slr2009	-	putative monovalent cation/H+ antiporter subunit D
678	 48.35	0	751034..751426	+	130	16329847	-	slr2010	-	hypothetical protein
679	 47.28	0	751381..751674	+	97	16329848	-	ssr3409	-	hypothetical protein
680	 49.83	0	751671..751967	+	98	16329849	-	ssr3410	-	hypothetical protein
681	 52.67	0	751936..752535	+	199	16329850	-	slr2011	-	hypothetical protein
682	 52.47	0	752532..753179	+	215	16329851	-	slr2012	-	putative monovalent cation/H+ antiporter subunit B
683	 52.60	0	753427..754734	+	435	16329852	-	slr2013	-	hypothetical protein
684	 42.56	-1	754877..755602	-	241	16329853	-	sll1924	-	hypothetical protein
685	 50.83	0	756053..757195	+	380	16329854	-	slr2015	-	hypothetical protein
686	 43.19	-1	757244..757720	+	158	16329855	-	slr2016	-	hypothetical protein
687	 44.23	0	757671..758753	+	360	16329856	-	slr2017	-	hypothetical protein
688	 45.58	0	758829..761228	+	799	16329857	-	slr2018	-	hypothetical protein
689	 51.57	0	761482..763263	+	593	16329858	-	slr2019	-	ABC transporter
690	 50.26	0	763317..764072	-	251	16329859	-	sll1921	-	hypothetical protein
691	 52.86	0	764301..766538	-	745	16329860	-	sll1920	-	cation-transporting ATPase; E1-E2 ATPase
692	 51.02	0	766727..767608	+	293	16329861	fabD	slr2023	-	acyl-carrier-protein S-malonyltransferase
693	 49.54	0	767890..768432	+	180	16329862	-	slr2024	-	CheY family protein
694	 50.65	0	768499..768960	+	153	16329863	-	slr2025	-	hypothetical protein
695	 49.31	0	769053..770291	-	412	16329864	hemN	sll1917	-	coproporphyrinogen III oxidase
696	 51.08	0	770288..770890	-	200	16329865	nadD	sll1916	-	nicotinic acid mononucleotide adenylyltransferase
697	 49.64	0	770930..771481	-	183	16329866	-	sll1915	-	hypothetical protein
698	 50.80	0	771651..772520	+	289	16329867	folP	slr2026	-	dihydropteroate pyrophosphorylase
699	 48.17	0	772511..773905	+	464	16329868	-	slr2027	-	hypothetical protein
700	 46.78	0	773827..775626	-	599	16329869	-	sll1913	-	hypothetical protein
701	 43.20	-1	775687..776061	-	124	16329870	-	sll1912	-	hypothetical protein
702	 44.21	0	776058..776342	-	94	16329871	-	ssl3615	-	hypothetical protein
703	 47.55	0	776551..776937	-	128	16329872	-	sll1911	-	hypothetical protein
704	 50.60	0	777066..779411	-	781	16329873	zam	sll1910	-	protein conferring resistance to acetazolamide; Zam
705	 48.82	0	780093..781448	+	451	16329874	-	slr2030	-	hypothetical protein
706	 49.08	0	781653..783011	+	452	16329875	-	slr2031	-	sigma factor SibG regulation protein; RsbU
707	 50.58	0	783379..784764	+	461	16329876	argH	slr1133	-	argininosuccinate lyase
708	 48.99	0	784769..785215	+	148	16329877	-	slr1134	-	hypothetical protein
709	 25.37	-2	785665..787812	+	715	16329878	-	slr1135	-	hypothetical protein
710	 48.19	0	787809..790406	-	865	16329879	-	sll1084	-	hypothetical protein
711	 51.25	0	790719..791717	+	332	16329880	ctaC	slr1136	-	cytochrome c oxidase subunit II
712	 49.82	0	791806..793461	+	551	16329881	ctaD	slr1137	-	cytochrome c oxidase subunit I
713	 47.72	0	793509..794210	+	233	16329882	ctaE	slr1138	-	cytochrome c oxidase subunit III
714	 48.48	0	794362..794691	+	109	16329883	trxA	slr1139	-	thioredoxin
715	 50.22	0	794764..795900	+	378	16329884	-	slr1140	-	3-amino-5-hydroxybenzoic acid synthase
716	 45.57	0	795932..796732	-	266	16329885	nrtD	sll1082	-	nitrate transport protein; NrtD
717	 41.52	-1	796789..797631	-	280	16329886	-	sll1081	-	integral membrane components of other binding-protein-dependent transport system
718	 46.18	0	797734..798792	-	352	16329887	-	sll1080	-	hypothetical protein
719	 44.78	0	798846..799535	-	229	16329888	hypB	sll1079	-	hydrogenase expression/formation protein; HypB
720	 44.63	0	799596..799958	-	120	16329889	-	sll1078	-	hypothetical protein
721	 52.00	0	800034..801206	-	390	16329890	speB	sll1077	-	agmatine ureohydrolase
722	 47.25	0	801643..802152	+	169	16329891	-	slr1142	-	hypothetical protein
723	 47.38	0	802207..803238	+	343	16329892	-	slr1143	-	hypothetical protein
724	 49.19	0	803466..806384	-	972	16329893	ziaA	sll1076	-	Zinc exporter
725	 49.12	0	806716..809325	-	869	16329894	leuS	sll1074	-	leucyl-tRNA synthetase
726	 47.73	0	809450..810658	+	402	16329895	gltS	slr1145	-	glutamate permease
727	 49.63	0	810922..811191	-	89	109150013	-	slr1146	-	hypothetical protein
728	 51.34	0	811489..812793	+	434	16329896	-	slr1147	-	sensory transduction histidine kinase
729	 48.15	0	813028..813594	+	188	16329897	-	slr1148	-	hypothetical protein
730	 49.17	0	813799..815604	+	601	16329898	-	slr1149	-	ABC transporter
731	 50.29	0	815703..816215	+	170	16329899	-	slr1150	-	hypothetical protein
732	 47.02	0	816298..816969	-	223	16329900	-	sll1072	-	hypothetical protein
733	 48.79	0	816983..817810	-	275	16329901	-	sll1071	-	hypothetical protein
734	 52.11	0	817967..819979	-	670	16329902	tktA	sll1070	-	transketolase
735	 50.84	0	820102..821352	-	416	16329903	fabF	sll1069	-	3-oxoacyl-(acyl carrier protein) synthase II
736	 43.59	0	821550..821783	-	77	16329904	acp	ssl2084	-	acyl carrier protein
737	 47.69	0	821993..822424	-	143	16329905	-	sll1068	-	hypothetical protein
738	 52.03	0	822461..822706	-	81	16329906	-	ssl3451	-	hypothetical protein
739	 42.75	-1	822837..823367	+	176	16329907	bfr	slr1890	-	bacterioferritin
740	 51.50	0	823383..824015	-	210	16329908	-	sll1825	-	short chain dehydrogenase
741	 48.21	0	824228..824785	-	185	16329909	-	sll1824	-	50S ribosomal protein L25
742	 52.00	0	824584..825831	-	415	16329910	purA	sll1823	-	adenylosuccinate synthetase
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.