IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
397	 44.64	0	432779..434308	-	509	16329567	-	sll0641	-	hypothetical protein
398	 48.78	0	434320..436158	-	612	16329568	Sac1	sll0640	-	sulfur deprivation response regulator
399	 53.49	+1	436234..437265	+	343	16329569	-	slr0688	-	hypothetical protein
400	 44.61	0	437705..437908	+	67	16329570	-	ssr1155	-	hypothetical protein
401	 55.39	+1	437922..439118	+	398	16329571	-	slr0689	-	hypothetical protein
402	 51.04	0	439184..440437	-	417	16329572	-	sll0639	-	hypothetical protein
403	 50.47	0	440610..441986	-	458	16329573	-	sll0638	-	hypothetical protein
404	 54.75	+1	442164..443933	+	589	16329574	ycf45	slr0692	-	hypothetical protein
405	 54.46	+1	443913..444944	-	343	16329575	thiE	sll0635	-	thiamine-phosphate pyrophosphorylase
406	 53.47	+1	445061..445924	-	287	16329576	btpA	sll0634	-	BtpA
407	 51.72	0	446230..446751	+	173	16329577	-	slr0695	-	hypothetical protein
408	 48.65	0	446807..447694	+	295	16329578	-	slr1590	-	hypothetical protein
409	 48.48	0	447831..448979	+	382	16329579	-	slr1591	-	hypothetical protein
410	 52.97	0	449166..450041	+	291	16329580	-	slr1592	-	hypothetical protein
411	 49.56	0	450740..451651	+	303	16329581	-	slr1593	-	hypothetical protein
412	 41.84	-1	451735..452922	+	395	16329582	-	slr1594	-	PatA subfamily protein
413	 42.42	-1	453214..454446	+	410	16329583	-	slr1595	-	Na/H antiporter
414	 53.12	0	454712..456586	-	624	16329584	-	sll1516	-	hypothetical protein
415	 41.72	-1	456975..458297	+	440	16329585	pxcA	slr1596	-	proton extrusion protein PcxA
416	 51.78	0	458408..458857	-	149	16329586	-	sll1515	-	hypothetical protein
417	 46.04	0	459200..460096	+	298	16329587	-	slr1597	-	hypothetical protein
418	 48.07	0	460250..460690	-	146	16329588	hsp17	sll1514	-	putative chaperone
419	 52.64	0	460956..461960	-	334	16329589	ccsA	sll1513	-	c-type cytochrome synthesis protein
420	 48.77	0	462147..462554	-	135	16329590	-	sll1512	-	hypothetical protein
421	 49.20	0	462809..463678	+	289	16329591	lipA	slr1598	-	lipoyl synthase
422	 44.98	0	463690..464307	-	205	16329592	-	sll1511	-	hypothetical protein
423	 39.14	-1	464437..465177	-	246	16329593	-	sll1510	-	hypothetical protein
424	 45.15	0	465232..465561	-	109	16329594	ycf20	sll1509	-	hypothetical protein
425	 46.38	0	465927..466493	+	188	16329595	-	slr1599	-	hypothetical protein
426	 49.56	0	466588..467037	+	149	16329596	-	slr1600	-	hypothetical protein
427	 50.00	0	467201..467296	+	31	16329597	psaM	smr0005	-	photosystem I reaction center subunit XII
428	 48.94	0	467436..467813	+	125	16329598	-	slr1601	-	hypothetical protein
429	 51.02	0	467836..468666	-	276	16329599	lpxC	sll1508	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
430	 49.08	0	469001..469546	-	181	16329600	-	sll1507	-	hypothetical protein
431	 50.26	0	469592..470914	+	440	16329601	-	slr1603	-	hypothetical protein
432	 52.24	0	471080..472930	+	616	16329602	ftsH	slr1604	-	cell division protein; FtsH
433	 46.99	0	473414..473662	+	82	16329603	-	ssr2699	-	transposase
434	 36.90	-2	473953..474204	-	83	16329604	vapC	ssl2923	-	virulence associated protein C
435	 34.21	-2	474205..474432	-	75	16329605	vapB	ssl2922	-	virulence associated protein B
436	 32.88	-2	474789..475007	-	72	16329606	-	ssl2920	-	hypothetical protein
437	 37.20	-2	475110..475445	-	111	16329607	-	sll1505	-	hypothetical protein
438	 37.54	-2	475435..475743	-	102	16329608	-	sll1504	-	hypothetical protein
439	 32.15	-2	475873..477399	-	508	16329609	-	sll1503	-	hypothetical protein
440	 50.59	0	477668..482320	-	1550	16329610	gltB	sll1502	-	glutamate synthase (ferredoxin)
441	 43.83	0	482542..482703	+	53	16329611	-	ssr2708	-	hypothetical protein
442	 49.80	0	482945..483199	+	84	16329612	-	ssr2711	-	hypothetical protein
443	 52.14	0	483326..484564	+	412	16329613	gdhB	slr1608	-	glucose dehydrogenase-B
444	 49.90	0	484799..486247	-	482	16329614	cbiA	sll1501	-	cobyrinic acid a,c-diamide synthase
445	 52.34	0	486244..487353	-	369	16329615	-	sll1500	-	hypothetical protein
446	 50.45	0	487287..489377	+	696	16329616	-	slr1609	-	long-chain-fatty-acid CoA ligase
447	 49.79	0	489722..490888	+	388	16329617	-	slr1041	-	PatA subfamily protein
448	 50.00	0	491006..491449	+	147	16329618	-	slr1042	-	CheY family protein
449	 52.84	0	491496..492059	+	187	16329619	-	slr1043	-	hypothetical protein
450	 53.49	+1	492130..494739	+	869	16329620	mcpA	slr1044	-	methyl-accepting chemotaxis protein
451	 49.75	0	494828..495619	+	263	16329621	-	slr1045	-	hypothetical protein
452	 45.41	0	495626..496006	+	126	16329622	-	slr1046	-	hypothetical protein
453	 41.65	-1	496450..497844	+	464	16329623	pleD	slr1047	-	PleD
454	 42.14	-1	498076..501096	+	1006	16329624	-	slr1048	-	hypothetical protein
455	 48.83	0	501178..501990	-	270	16329625	-	sll1011	-	hypothetical protein
456	 51.72	0	502042..502215	+	57	16329626	rpmF	ssr1736	-	50S ribosomal protein L32
457	 47.35	0	502314..503747	+	477	16329627	-	slr1050	-	hypothetical protein
458	 51.02	0	503883..504719	+	278	16329628	envM	slr1051	-	enoyl-(acyl carrier protein) reductase
459	 53.61	+1	504755..505267	+	170	16329629	-	slr1052	-	hypothetical protein
460	 50.00	0	505356..506159	+	267	16329630	-	slr1053	-	hypothetical protein
461	 48.03	0	506252..508027	-	591	16329631	frpC	sll1009	-	iron-regulated protein
462	 52.18	0	508515..512510	+	1331	16329632	chlH	slr1055	-	magnesium chelatase
463	 31.10	-2	512615..514633	+	672	16329633	-	slr1056	-	hypothetical protein
464	 48.45	0	514847..515944	-	365	16329634	-	sll1006	-	hypothetical protein
465	 49.01	0	516088..516897	-	269	16329635	mazG	sll1005	-	nucleoside triphosphate pyrophosphohydrolase
466	 53.00	0	517027..518211	-	394	16329636	-	sll1004	-	hypothetical protein
467	 39.22	-1	518287..520272	-	661	16329637	-	sll1003	-	sensory transduction histidine kinase
468	 47.17	0	520682..520840	-	52	16329638	-	ssl1923	-	hypothetical protein
469	 44.84	0	520918..521169	-	83	16329639	-	ssl1922	-	transposase
470	 43.97	0	521076..521357	-	93	16329640	-	ssl1920	-	transposase
471	 52.44	0	521483..522853	-	456	16329641	ycf22	sll1002	-	hypothetical protein
472	 51.98	0	523016..523798	-	260	16329642	-	sll1001	-	ABC transporter
473	 49.66	0	523821..524114	-	97	16329643	-	ssl1918	-	hypothetical protein
474	 48.84	0	524346..529595	+	1749	16329644	-	slr1753	-	hypothetical protein
475	 52.06	0	529696..530688	+	330	16329645	gpsA	slr1755	-	NAD+ dependent glycerol-3-phosphate dehydrogenase
476	 51.25	0	530717..531235	-	172	16329646	-	sll1647	-	hypothetical protein
477	 52.60	0	531446..532867	+	473	16329647	glnA	slr1756	-	glutamate--ammonia ligase
478	 50.03	0	533086..537474	+	1462	16329648	-	slr1759	-	hybrid sensory kinase
479	 50.21	0	537471..538418	+	315	16329649	-	slr1760	-	regulatory components of sensory transduction system
480	 50.00	0	538415..539020	+	201	16329650	ytfC	slr1761	-	FKBP-type peptidyl-prolyl cis-trans isomerase
481	 49.74	0	539288..539854	-	188	16329651	-	sll1643	-	hypothetical protein
482	 54.65	+1	540098..540763	+	221	16329652	-	slr1762	-	hypothetical protein
483	 47.30	0	540863..542065	+	400	16329653	-	slr1763	-	hypothetical protein
484	 34.35	-2	542105..542596	-	163	16329654	-	sll1642	-	hypothetical protein
485	 37.04	-2	542803..543342	+	179	16329655	capA	slr1764	-	cAMP binding protein
486	 49.72	0	543468..544871	-	467	16329656	gad	sll1641	-	glutamate decarboxylase
487	 48.44	0	545029..545253	+	74	16329657	-	ssr2962	-	hypothetical protein
488	 42.48	-1	545250..545588	+	112	16329658	-	slr1767	-	hypothetical protein
489	 48.86	0	545591..546556	-	321	16329659	-	sll1640	-	hypothetical protein
490	 50.28	0	546553..547278	-	241	16329660	ureD	sll1639	-	urease accessory protein D
491	 49.33	0	547425..547874	-	149	16329661	-	sll1638	-	hypothetical protein
492	 44.15	0	548236..549132	+	298	16329662	-	slr1768	-	hypothetical protein
493	 52.88	0	549129..549701	-	190	16329663	fbp	sll1636	-	ferripyochelin binding protein
494	 47.02	0	549994..550329	+	111	16329664	-	slr1770	-	hypothetical protein
495	 50.37	0	550563..552170	+	535	16329665	-	slr1771	-	hypothetical protein
496	 47.07	0	552220..552867	-	215	16329666	thyX	sll1635	-	FAD-dependent thymidylate synthase
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.