IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2881	 48.18	0	3225628..3226314	-	228	16332047	-	sll0493	-	hypothetical protein
2882	 52.97	0	3226340..3227266	-	308	16332048	argF	sll0902	-	ornithine carbamoyltransferase
2883	 55.37	+1	3227379..3227909	-	176	16332049	purE	sll0901	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
2884	 47.27	0	3228010..3228375	+	121	16332050	ssb	slr0925	-	single-strand DNA-binding protein
2885	 54.04	+1	3228712..3229590	+	292	16332051	ubiA	slr0926	-	prenyltransferase
2886	 52.69	0	3229780..3230838	+	352	16332052	psbD2	slr0927	-	photosystem II D2 protein
2887	 50.17	0	3230963..3231550	+	195	16332053	-	slr0929	-	hypothetical protein
2888	 49.12	0	3231569..3232879	+	436	16332054	-	slr0930	-	hypothetical protein
2889	 49.10	0	3232902..3233180	+	92	16332055	-	ssr1558	-	hypothetical protein
2890	 52.92	0	3233177..3233809	-	210	16332056	hisG	sll0900	-	ATP phosphoribosyltransferase catalytic subunit
2891	 52.74	0	3233816..3235186	-	456	16332057	glmU	sll0899	-	UDP-N-acetylglucosamine pyrophosphorylase
2892	 45.24	0	3235429..3235680	+	83	16332058	-	ssr1562	-	hypothetical protein
2893	 50.99	0	3235746..3236855	-	369	16332059	-	sll0898	-	ribosome-associated GTPase
2894	 50.98	0	3236874..3237128	-	84	16332060	-	ssl1707	-	hypothetical protein
2895	 51.94	0	3237125..3238258	-	377	16332061	dnaJ	sll0897	-	DnaJ protein
2896	 50.00	0	3238365..3238868	-	167	16332062	-	sll0896	-	Holliday juction resolvase; RuvC
2897	 50.34	0	3238873..3239748	-	291	16332063	cysQ	sll0895	-	ammonium transport protein
2898	 49.66	0	3240181..3241068	+	295	16332064	trpC	slr0546	-	indole-3-glycerol-phosphate synthase
2899	 50.92	0	3241089..3242714	-	541	16332065	amt3	sll0537	-	ammonium/methylammonium permease
2900	 51.17	0	3242711..3243781	-	356	16332066	-	sll0536	-	hypothetical protein
2901	 47.68	0	3244079..3245416	-	445	16332067	clpX	sll0535	-	ATP-dependent protease ATP-binding subunit
2902	 53.30	+1	3245421..3246101	-	226	16332068	clpP	sll0534	-	ATP-dependent Clp protease proteolytic subunit
2903	 50.64	0	3246401..3247816	-	471	16332069	tig	sll0533	-	trigger factor
2904	 54.09	+1	3248484..3249326	+	280	16332070	asd	slr0549	-	aspartate beta-semialdehyde dehydrogenese
2905	 55.96	+1	3249386..3250291	+	301	16332071	dapA	slr0550	-	dihydrodipicolinate synthase
2906	 51.33	0	3250985..3252907	+	640	16332072	-	slr0551	-	hypothetical protein
2907	 48.44	0	3252992..3253726	+	244	16332073	-	slr0552	-	hypothetical protein
2908	 49.34	0	3253809..3254414	+	201	16332074	-	slr0553	-	hypothetical protein
2909	 51.72	0	3254560..3257670	+	1036	16332075	-	slr0554	-	hypothetical protein
2910	 52.41	0	3257692..3259887	-	731	16332076	-	sll0529	-	hypothetical protein
2911	 48.86	0	3260137..3261276	-	379	16332077	-	sll0528	-	hypothetical protein
2912	 46.73	0	3261406..3262062	+	218	16332078	-	slr0556	-	hypothetical protein
2913	 42.42	-1	3262064..3262459	-	131	16332079	-	sll0525	-	hypothetical protein
2914	 42.65	-1	3262471..3262749	-	92	16332080	-	ssl1004	-	hypothetical protein
2915	 51.56	0	3262819..3264162	-	447	16332081	-	sll0524	-	hypothetical protein
2916	 50.09	0	3264290..3267022	+	910	16332082	valS	slr0557	-	valyl-tRNA synthetase
2917	 48.72	0	3267244..3267555	-	103	16332083	ndhE	sll0522	-	NADH dehydrogenase subunit K
2918	 47.74	0	3267695..3268291	-	198	16332084	ndhG	sll0521	-	NADH dehydrogenase subunit J
2919	 46.74	0	3268386..3268967	-	193	16332085	ndhI	sll0520	-	NADH dehydrogenase subunit I
2920	 51.03	0	3269078..3270196	-	372	16332086	ndhA	sll0519	-	NADH dehydrogenase subunit H
2921	 50.87	0	3270451..3271596	+	381	16332087	pyrD	slr1418	-	dihydroorotate dehydrogenase 2
2922	 47.71	0	3271699..3272178	+	159	16332088	-	slr1419	-	hypothetical protein
2923	 45.23	0	3272165..3273442	+	425	16332089	-	slr1420	-	hypothetical protein
2924	 39.81	-1	3273693..3274016	+	107	16332090	-	slr1421	-	hypothetical protein
2925	 47.24	0	3274546..3275307	-	253	16332091	-	sll1344	-	hypothetical protein
2926	 47.09	0	3275314..3277923	-	869	16332092	ape2	sll1343	-	aminopeptidase
2927	 51.78	0	3278122..3279135	-	337	16332093	gap2	sll1342	-	glyceraldehyde-3-phosphate dehydrogenase
2928	 52.31	0	3279390..3280907	+	505	16332094	murC	slr1423	-	UDP-N-acetylmuramate--L-alanine ligase
2929	 51.89	0	3280979..3281932	+	317	16332095	-	slr1424	-	hypothetical protein
2930	 55.37	+1	3281954..3282307	+	117	16332096	-	slr1425	-	hypothetical protein
2931	 47.98	0	3282442..3282912	-	156	16332097	bfr	sll1341	-	bacterioferritin
2932	 50.17	0	3283104..3283406	-	100	16332098	-	sll1340	-	hypothetical protein
2933	 51.65	0	3283467..3284165	+	232	16332099	recR	slr1426	-	recombination protein RecR
2934	 53.90	+1	3284283..3284846	-	187	16332100	-	sll1338	-	hypothetical protein
2935	 52.79	0	3285051..3287168	-	705	16332101	-	sll1336	-	hypothetical protein
2936	 52.54	0	3287354..3289264	+	636	16332102	-	slr1428	-	hypothetical protein
2937	 47.25	0	3289256..3290785	-	509	16332103	-	sll1334	-	hypothetical protein
2938	 51.03	0	3291097..3291966	+	289	16332104	-	slr1429	-	hypothetical protein
2939	 52.68	0	3292177..3292884	-	235	16332105	-	sll1333	-	hypothetical protein
2940	 53.50	+1	3293078..3294505	+	475	16332106	-	slr1431	-	hypothetical protein
2941	 51.13	0	3294498..3295250	-	250	16332107	-	sll1330	-	OmpR subfamily
2942	 52.20	0	3295580..3296443	-	287	16332108	-	sll1329	-	monophosphatase
2943	 52.54	0	3296462..3297247	+	261	16332109	-	slr1451	-	hypothetical protein
2944	 45.42	0	3297312..3298097	-	261	16332110	-	sll1367	-	hypothetical protein
2945	 47.69	0	3298326..3299384	+	352	16332111	sbpA	slr1452	-	sulfate binding protein; SbpA
2946	 46.94	0	3299421..3299714	+	97	16332112	-	ssr2439	-	hypothetical protein
2947	 44.02	0	3299716..3300576	+	286	16332113	cysT	slr1453	-	sulfate transport system permease protein
2948	 44.89	0	3300563..3301393	+	276	16332114	cysW	slr1454	-	sulfate transport system permease protein
2949	 44.19	0	3301555..3302622	+	355	16332115	cysA	slr1455	-	sulfate transport system permease protein
2950	 48.67	0	3302812..3303339	+	175	16332116	-	slr1456	-	general secretion pathway protein G
2951	 51.17	0	3303481..3304680	+	399	16332117	chrA	slr1457	-	chromate transport protein
2952	 51.96	0	3304872..3305381	+	169	16332118	apcF	slr1459	-	phycobilisome core component
2953	 52.34	0	3305654..3308773	-	1039	16332119	-	sll1366	-	Snf2/Rad54 family helicase
2954	 47.74	0	3308878..3309474	+	198	16332120	-	slr1461	-	hypothetical protein
2955	 48.95	0	3309530..3311431	-	633	16332121	-	sll1365	-	hypothetical protein
2956	 50.12	0	3311660..3313345	+	561	16332122	-	slr1462	-	hypothetical protein
2957	 51.25	0	3313667..3315754	+	695	16332123	fus	slr1463	-	elongation factor G
2958	 50.00	0	3315938..3316735	+	265	16332124	-	slr1464	-	hypothetical protein
2959	 47.19	0	3317363..3317593	-	76	16332125	-	ssl2667	-	NifU protein
2960	 50.00	0	3317701..3318804	-	367	16332126	ilvC	sll1363	-	ketol-acid reductoisomerase
2961	 48.96	0	3318829..3319212	+	127	16332127	-	slr0651	-	hypothetical protein
2962	 52.40	0	3319281..3320051	+	256	16332128	hisA	slr0652	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2963	 51.68	0	3320075..3321736	-	553	16332129	nadB	sll0631	-	L-aspartate oxidase
2964	 48.86	0	3321844..3322281	-	145	16332130	-	sll0630	-	hypothetical protein
2965	 48.58	0	3322377..3322763	-	128	16332131	psaK	sll0629	-	photosystem I subunit X
2966	 49.37	0	3323275..3324552	+	425	16332132	rpoDI	slr0653	-	RNA polymerase sigma factor RpoD
2967	 48.69	0	3330281..3331042	+	253	16332133	-	slr0654	-	hypothetical protein
2968	 50.64	0	3331045..3331587	+	180	16332134	-	slr0655	-	hypothetical protein
2969	 43.19	-1	3331625..3332821	+	398	16332135	-	slr0656	-	hypothetical protein
2970	 53.36	+1	3333244..3335046	+	600	16332136	lysC	slr0657	-	aspartate kinase
2971	 46.89	0	3335247..3336242	+	331	16332137	-	slr0658	-	hypothetical protein
2972	 51.77	0	3336407..3338548	+	713	16332138	prlC	slr0659	-	oligopeptidase A
2973	 55.10	+1	3338682..3339485	+	267	16332139	proC	slr0661	-	pyrroline-5-carboxylate reductase
2974	 49.80	0	3339500..3340969	-	489	16332140	lim17	sll0626	-	LIM17 protein
2975	 48.23	0	3341166..3341843	-	225	16332141	-	sll0625	-	hypothetical protein
2976	 42.45	-1	3342125..3342442	-	105	16332142	-	sll0624	-	hypothetical protein
2977	 49.09	0	3342857..3344944	+	695	16332143	speA	slr0662	-	arginine decarboxylase
2978	 52.47	0	3345027..3345815	-	262	16332144	-	sll0623	-	hypothetical protein
2979	 49.74	0	3345861..3346817	-	318	16332145	nadA	sll0622	-	quinolinate synthetase
2980	 51.67	0	3346910..3347656	-	248	16332146	dsbD	sll0621	-	thiol:disulfide interchange protein; DsbD
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.