IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2836	 50.93	0	3166607..3167680	+	357	16332002	-	slr0039	-	hypothetical protein
2837	 42.84	-1	3167887..3168801	-	304	16332003	cmpR	sll0030	-	CmpR
2838	 48.79	0	3169054..3170412	+	452	16332004	cmpA	slr0040	-	bicarbonate transporter
2839	 46.03	0	3170475..3171317	+	280	16332005	cmpB	slr0041	-	hypothetical protein
2840	 50.49	0	3171428..3173158	+	576	16332006	-	slr0042	-	hypothetical protein
2841	 51.65	0	3173335..3175338	+	667	16332007	nrtC	slr0043	-	nitrate transport protein; NrtC
2842	 51.00	0	3175411..3176259	+	282	16332008	nrtD	slr0044	-	nitrate transport protein; NrtD
2843	 48.88	0	3176543..3178066	-	507	16332009	ndhD	sll0027	-	NAD(P)H-quinone oxidoreductase subunit D4
2844	 50.18	0	3178231..3180135	-	634	16332010	ndhF	sll0026	-	NAD(P)H-quinone oxidoreductase subunit F
2845	 49.05	0	3180380..3181537	-	385	16332011	-	sll0518	-	hypothetical protein
2846	 53.27	+1	3181708..3182013	-	101	16332012	rbpA	sll0517	-	RNA binding protein
2847	 50.65	0	3182315..3183007	+	230	16332013	chlM	slr0525	-	Mg-protoporphyrin IX methyl transferase
2848	 54.79	+1	3183014..3183796	+	260	16332014	panB	slr0526	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2849	 52.45	0	3183756..3184571	+	271	16332015	exsB	slr0527	-	ExsB protein
2850	 54.61	+1	3184733..3186250	+	505	16332016	murE	slr0528	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2851	 51.23	0	3186379..3188043	-	554	16332017	-	sll0514	-	hypothetical protein
2852	 50.32	0	3188483..3189748	+	421	16332018	-	slr0529	-	hypothetical protein
2853	 46.07	0	3189929..3190768	+	279	16332019	-	slr0530	-	membrane bound sugar transport protein
2854	 47.60	0	3190768..3191664	+	298	16332020	-	slr0531	-	membrane bound sugar transport protein
2855	 52.40	0	3191661..3192494	-	277	16332021	-	sll0513	-	hypothetical protein
2856	 51.81	0	3192683..3193900	+	405	16332022	-	slr0533	-	sensory transduction histidine kinase
2857	 50.51	0	3193999..3196542	+	847	16332023	slt	slr0534	-	soluble lytic transglycosylase
2858	 50.98	0	3196783..3198624	+	613	16332024	-	slr0535	-	serine proteinase
2859	 51.19	0	3198731..3199783	+	350	16332025	hemE	slr0536	-	uroporphyrinogen decarboxylase
2860	 45.10	0	3199930..3200838	-	302	16332026	-	sll0509	-	AP-4-A phosphorylase II
2861	 44.44	0	3200940..3201452	-	170	16332027	-	sll0508	-	hypothetical protein
2862	 50.50	0	3201688..3202689	+	333	16332028	-	slr0537	-	hypothetical protein
2863	 43.13	-1	3202699..3203862	-	387	16332029	-	sll0507	-	magnesium and cobalt transport protein
2864	 50.80	0	3203994..3204743	-	249	16332030	-	sll0506	-	hypothetical protein
2865	 51.97	0	3204740..3205651	-	303	16332031	-	sll0505	-	hypothetical protein
2866	 52.84	0	3205694..3207103	-	469	16332032	lysA	sll0504	-	diaminopimelate decarboxylase
2867	 45.96	0	3207272..3208696	-	474	16332033	-	sll0503	-	hypothetical protein
2868	 44.44	0	3208698..3210452	-	584	16332034	argS	sll0502	-	arginyl-tRNA synthetase
2869	 41.48	-1	3210650..3211606	-	318	16332035	-	sll0501	-	hypothetical protein
2870	 50.21	0	3211808..3212518	+	236	16332036	-	slr0541	-	hypothetical protein
2871	 50.25	0	3212598..3213194	+	198	16332037	clpP	slr0542	-	ATP-dependent protease; ClpP
2872	 52.30	0	3213272..3214510	+	412	16332038	trpB	slr0543	-	tryptophan synthase subunit beta
2873	 45.80	0	3214581..3217427	-	948	16332039	-	sll0499	-	hypothetical protein
2874	 51.06	0	3217855..3218655	+	266	16332040	-	slr0544	-	ABC transporter
2875	 45.70	0	3218679..3219131	-	150	16332041	-	sll0498	-	hypothetical protein
2876	 50.72	0	3219158..3219985	-	275	16332042	-	sll0497	-	hypothetical protein
2877	 50.48	0	3220162..3221106	+	314	16332043	-	slr0545	-	auxin-induced protein
2878	 45.49	0	3221251..3222435	-	394	16332044	-	sll0496	-	hypothetical protein
2879	 47.01	0	3222476..3223864	-	462	161344750	asnC	sll0495	-	asparaginyl-tRNA synthetase
2880	 34.55	-2	3224429..3225334	-	301	16332046	-	sll0494	-	hypothetical protein
2881	 48.18	0	3225628..3226314	-	228	16332047	-	sll0493	-	hypothetical protein
2882	 52.97	0	3226340..3227266	-	308	16332048	argF	sll0902	-	ornithine carbamoyltransferase
2883	 55.37	+1	3227379..3227909	-	176	16332049	purE	sll0901	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
2884	 47.27	0	3228010..3228375	+	121	16332050	ssb	slr0925	-	single-strand DNA-binding protein
2885	 54.04	+1	3228712..3229590	+	292	16332051	ubiA	slr0926	-	prenyltransferase
2886	 52.69	0	3229780..3230838	+	352	16332052	psbD2	slr0927	-	photosystem II D2 protein
2887	 50.17	0	3230963..3231550	+	195	16332053	-	slr0929	-	hypothetical protein
2888	 49.12	0	3231569..3232879	+	436	16332054	-	slr0930	-	hypothetical protein
2889	 49.10	0	3232902..3233180	+	92	16332055	-	ssr1558	-	hypothetical protein
2890	 52.92	0	3233177..3233809	-	210	16332056	hisG	sll0900	-	ATP phosphoribosyltransferase catalytic subunit
2891	 52.74	0	3233816..3235186	-	456	16332057	glmU	sll0899	-	UDP-N-acetylglucosamine pyrophosphorylase
2892	 45.24	0	3235429..3235680	+	83	16332058	-	ssr1562	-	hypothetical protein
2893	 50.99	0	3235746..3236855	-	369	16332059	-	sll0898	-	ribosome-associated GTPase
2894	 50.98	0	3236874..3237128	-	84	16332060	-	ssl1707	-	hypothetical protein
2895	 51.94	0	3237125..3238258	-	377	16332061	dnaJ	sll0897	-	DnaJ protein
2896	 50.00	0	3238365..3238868	-	167	16332062	-	sll0896	-	Holliday juction resolvase; RuvC
2897	 50.34	0	3238873..3239748	-	291	16332063	cysQ	sll0895	-	ammonium transport protein
2898	 49.66	0	3240181..3241068	+	295	16332064	trpC	slr0546	-	indole-3-glycerol-phosphate synthase
2899	 50.92	0	3241089..3242714	-	541	16332065	amt3	sll0537	-	ammonium/methylammonium permease
2900	 51.17	0	3242711..3243781	-	356	16332066	-	sll0536	-	hypothetical protein
2901	 47.68	0	3244079..3245416	-	445	16332067	clpX	sll0535	-	ATP-dependent protease ATP-binding subunit
2902	 53.30	+1	3245421..3246101	-	226	16332068	clpP	sll0534	-	ATP-dependent Clp protease proteolytic subunit
2903	 50.64	0	3246401..3247816	-	471	16332069	tig	sll0533	-	trigger factor
2904	 54.09	+1	3248484..3249326	+	280	16332070	asd	slr0549	-	aspartate beta-semialdehyde dehydrogenese
2905	 55.96	+1	3249386..3250291	+	301	16332071	dapA	slr0550	-	dihydrodipicolinate synthase
2906	 51.33	0	3250985..3252907	+	640	16332072	-	slr0551	-	hypothetical protein
2907	 48.44	0	3252992..3253726	+	244	16332073	-	slr0552	-	hypothetical protein
2908	 49.34	0	3253809..3254414	+	201	16332074	-	slr0553	-	hypothetical protein
2909	 51.72	0	3254560..3257670	+	1036	16332075	-	slr0554	-	hypothetical protein
2910	 52.41	0	3257692..3259887	-	731	16332076	-	sll0529	-	hypothetical protein
2911	 48.86	0	3260137..3261276	-	379	16332077	-	sll0528	-	hypothetical protein
2912	 46.73	0	3261406..3262062	+	218	16332078	-	slr0556	-	hypothetical protein
2913	 42.42	-1	3262064..3262459	-	131	16332079	-	sll0525	-	hypothetical protein
2914	 42.65	-1	3262471..3262749	-	92	16332080	-	ssl1004	-	hypothetical protein
2915	 51.56	0	3262819..3264162	-	447	16332081	-	sll0524	-	hypothetical protein
2916	 50.09	0	3264290..3267022	+	910	16332082	valS	slr0557	-	valyl-tRNA synthetase
2917	 48.72	0	3267244..3267555	-	103	16332083	ndhE	sll0522	-	NADH dehydrogenase subunit K
2918	 47.74	0	3267695..3268291	-	198	16332084	ndhG	sll0521	-	NADH dehydrogenase subunit J
2919	 46.74	0	3268386..3268967	-	193	16332085	ndhI	sll0520	-	NADH dehydrogenase subunit I
2920	 51.03	0	3269078..3270196	-	372	16332086	ndhA	sll0519	-	NADH dehydrogenase subunit H
2921	 50.87	0	3270451..3271596	+	381	16332087	pyrD	slr1418	-	dihydroorotate dehydrogenase 2
2922	 47.71	0	3271699..3272178	+	159	16332088	-	slr1419	-	hypothetical protein
2923	 45.23	0	3272165..3273442	+	425	16332089	-	slr1420	-	hypothetical protein
2924	 39.81	-1	3273693..3274016	+	107	16332090	-	slr1421	-	hypothetical protein
2925	 47.24	0	3274546..3275307	-	253	16332091	-	sll1344	-	hypothetical protein
2926	 47.09	0	3275314..3277923	-	869	16332092	ape2	sll1343	-	aminopeptidase
2927	 51.78	0	3278122..3279135	-	337	16332093	gap2	sll1342	-	glyceraldehyde-3-phosphate dehydrogenase
2928	 52.31	0	3279390..3280907	+	505	16332094	murC	slr1423	-	UDP-N-acetylmuramate--L-alanine ligase
2929	 51.89	0	3280979..3281932	+	317	16332095	-	slr1424	-	hypothetical protein
2930	 55.37	+1	3281954..3282307	+	117	16332096	-	slr1425	-	hypothetical protein
2931	 47.98	0	3282442..3282912	-	156	16332097	bfr	sll1341	-	bacterioferritin
2932	 50.17	0	3283104..3283406	-	100	16332098	-	sll1340	-	hypothetical protein
2933	 51.65	0	3283467..3284165	+	232	16332099	recR	slr1426	-	recombination protein RecR
2934	 53.90	+1	3284283..3284846	-	187	16332100	-	sll1338	-	hypothetical protein
2935	 52.79	0	3285051..3287168	-	705	16332101	-	sll1336	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.