IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2427	 50.45	0	2698258..2699145	-	295	16331593	lpxA	sll0379	-	UDP-N-acetylglucosamine acyltransferase
2428	 51.75	0	2699172..2699855	+	227	16331594	-	slr0420	-	hypothetical protein
2429	 40.00	-1	2700069..2700818	+	249	16331595	-	slr0421	-	hypothetical protein
2430	 50.38	0	2700944..2701735	-	263	16331596	cysG	sll0378	-	uroporphyrin-III C-methyltransferase
2431	 47.19	0	2701931..2705530	-	1199	16331597	mfd	sll0377	-	transcription-repair coupling factor
2432	 49.35	0	2705678..2705983	-	101	16331598	-	sll0376	-	hypothetical protein
2433	 53.52	+1	2706733..2707698	+	321	16331599	rlpA	slr0423	-	rare lipoprotein A
2434	 48.67	0	2708257..2709006	-	249	16331600	braG	sll0374	-	high-affinity branched-chain amino acid transport ATP-binding protein
2435	 51.15	0	2709084..2710385	-	433	16331601	proA	sll0373	-	gamma-glutamyl phosphate reductase
2436	 48.07	0	2710511..2711107	-	198	16331602	-	sll0372	-	hypothetical protein
2437	 42.01	-1	2711419..2711637	-	72	16331603	-	ssl0738	-	hypothetical protein
2438	 31.42	-2	2711740..2713305	-	521	16331604	-	sll0371	-	hypothetical protein
2439	 51.39	0	2713371..2716616	-	1081	161344753	carB	sll0370	-	carbamoyl phosphate synthase large subunit
2440	 46.62	0	2716735..2717163	-	142	16331606	-	sll0369	-	hypothetical protein
2441	 49.35	0	2717177..2717713	-	178	16331607	pyrR	sll0368	-	pyrimidine regulatory protein PyrR
2442	 46.10	0	2718050..2718754	+	234	16331608	folE	slr0426	-	GTP cyclohydrolase I
2443	 52.84	0	2718963..2720213	+	416	16331609	-	slr0427	-	competence damage-inducible protein A
2444	 51.66	0	2720250..2720702	-	150	16331610	-	sll0189	-	hypothetical protein
2445	 56.18	+1	2720729..2722234	-	501	16331611	-	sll0188	-	hypothetical protein
2446	 53.67	+1	2722431..2724038	+	535	16331612	lytB	slr0191	-	amidase enhancer
2447	 50.72	0	2724075..2724419	+	114	16331613	-	slr0192	-	hypothetical protein
2448	 49.34	0	2724648..2725103	+	151	16331614	-	slr0193	-	RNA-binding protein
2449	 49.72	0	2725326..2726033	+	235	16331615	rpiA	slr0194	-	ribose-5-phosphate isomerase A
2450	 50.54	0	2726089..2726640	+	183	16331616	-	slr0195	-	hypothetical protein
2451	 47.92	0	2726676..2727059	+	127	16331617	-	slr0196	-	hypothetical protein
2452	 48.01	0	2727047..2728708	+	553	16331618	-	slr0197	-	ComE ORF1
2453	 52.62	0	2728812..2730071	-	419	16331619	-	sll0185	-	hypothetical protein
2454	 47.65	0	2730649..2731563	+	304	16331620	-	slr0199	-	hypothetical protein
2455	 51.19	0	2731560..2732774	-	404	16331621	rpoD	sll0184	-	RNA polymerase sigma factor SigC
2456	 50.00	0	2733081..2733986	+	301	16331622	hdrB	slr0201	-	heterodisulfide reductase subunit B
2457	 50.68	0	2734030..2734323	-	97	16331623	-	ssl0353	-	hypothetical protein
2458	 51.79	0	2734522..2735301	-	259	16331624	-	sll0183	-	hypothetical protein
2459	 45.76	0	2735422..2735598	-	58	16331625	-	ssl0352	-	hypothetical protein
2460	 48.49	0	2735806..2737791	-	661	16331626	-	sll0182	-	ABC transporter
2461	 32.85	-2	2737929..2738552	-	207	16331627	-	sll0181	-	hypothetical protein
2462	 36.27	-2	2738712..2738915	-	67	16331628	-	ssl0350	-	hypothetical protein
2463	 53.45	+1	2739149..2740654	-	501	16331629	-	sll0180	-	hypothetical protein
2464	 50.36	0	2740911..2741327	+	138	16331630	-	slr0204	-	hypothetical protein
2465	 51.86	0	2741674..2743125	-	483	16331631	gltX	sll0179	-	glutamyl-tRNA synthetase
2466	 41.84	-1	2743295..2744917	+	540	16331632	-	slr0207	-	hypothetical protein
2467	 48.21	0	2744987..2745766	+	259	16331633	-	slr0208	-	hypothetical protein
2468	 48.25	0	2745934..2746161	+	75	16331634	ftrV	ssr0330	-	ferredoxin-thioredoxin reductase, variable chain
2469	 39.54	-1	2746288..2747334	+	348	16331635	-	slr0209	-	hypothetical protein
2470	 43.46	0	2747604..2748857	+	417	16331636	-	slr0210	-	sensory transduction histidine kinase
2471	 49.30	0	2748946..2749158	+	70	16331637	-	ssr0332	-	hypothetical protein
2472	 50.00	0	2749230..2750441	+	403	16331638	-	slr0211	-	hypothetical protein
2473	 46.25	0	2750577..2750816	-	79	16331639	-	ssl0331	-	hypothetical protein
2474	 46.96	0	2751026..2754613	+	1195	16331640	metH	slr0212	-	5-methyltetrahydrofolate--homocysteine methyltransferase
2475	 36.71	-2	2754850..2755086	+	78	16331641	-	ssr0336	-	hypothetical protein
2476	 37.15	-2	2755703..2759662	-	1319	16331642	-	sll0178	-	hypothetical protein
2477	 42.76	-1	2759808..2760380	-	190	16331643	-	sll0888	-	hypothetical protein
2478	 44.95	0	2760435..2760632	+	65	16331644	-	ssr1513	-	hypothetical protein
2479	 51.23	0	2760689..2762029	-	446	16331645	-	sll0887	-	hypothetical protein
2480	 51.31	0	2762114..2762953	-	279	16331646	-	sll0886	-	hypothetical protein
2481	 52.48	0	2763170..2763733	+	187	16331647	-	slr0895	-	hypothetical protein
2482	 49.57	0	2763867..2765252	+	461	16331648	-	slr0896	-	hypothetical protein
2483	 52.94	0	2765554..2768766	+	1070	16331649	-	slr0897	-	endo-1,4-beta-glucanase
2484	 50.50	0	2769125..2770633	+	502	16331650	nirA	slr0898	-	ferredoxin-nitrite reductase
2485	 47.33	0	2770857..2771306	+	149	16331651	cynS	slr0899	-	cyanate hydratase
2486	 42.88	-1	2771322..2772494	+	390	16331652	moeA	slr0900	-	molybdopterin biosynthesis; MoeA
2487	 39.02	-1	2772470..2773453	+	327	16331653	moaA	slr0901	-	molybdenum cofactor biosynthesis protein A
2488	 40.04	-1	2773454..2774497	+	347	16331654	moaC	slr0902	-	bifunctional molybdenum cofactor biosynthesis protein C/molybdopterin-guanine dinucleotide biosynthesis protein A
2489	 37.40	-2	2774481..2774726	+	81	16331655	-	ssr1527	-	hypothetical protein
2490	 41.78	-1	2774732..2775169	+	145	16331656	moaE	slr0903	-	molybdopterin (MPT) converting factor, subunit 2
2491	 49.47	0	2775324..2775608	+	94	16331657	-	ssr1528	-	hypothetical protein
2492	 52.61	0	2775767..2777296	+	509	16331658	-	slr0904	-	hypothetical protein
2493	 42.87	-1	2777447..2778946	+	499	16331659	bchE	slr0905	-	Mg-protoporphyrin IX monomethyl ester oxidative cyclase 66 kD subunit
2494	 52.56	0	2779510..2781033	+	507	16331660	psbB	slr0906	-	photosystem II CP47 protein
2495	 47.75	0	2781403..2784447	+	1014	16331661	-	slr0907	-	hypothetical protein
2496	 41.09	-1	2784503..2785855	+	450	16331662	-	slr0909	-	hypothetical protein
2497	 40.41	-1	2785941..2786717	+	258	16331663	-	slr0912	-	hypothetical protein
2498	 32.47	-2	2786798..2788417	+	539	16331664	-	slr0913	-	hypothetical protein
2499	 35.11	-2	2788450..2790246	+	598	16331665	-	slr0914	-	hypothetical protein
2500	 46.14	0	2791074..2791526	+	150	16331666	-	slr0915	-	putative endonuclease
2501	 52.20	0	2791820..2793001	+	393	161344752	bioF	slr0917	-	8-amino-7-oxononanoate synthase
2502	 51.84	0	2793159..2793920	+	253	16331668	map	slr0918	-	methionine aminopeptidase
2503	 51.75	0	2793926..2794381	+	151	16331669	-	slr0919	-	hypothetical protein
2504	 53.78	+1	2794431..2794880	+	149	16331670	-	slr0920	-	hypothetical protein
2505	 47.72	0	2794938..2795375	-	145	16331671	panD	sll0892	-	aspartate alpha-decarboxylase
2506	 54.15	+1	2795426..2796400	-	324	16331672	citH	sll0891	-	2-ketoacid dehydrogenase; malate dehydrogenase; lactate dehydrogenase
2507	 49.32	0	2796438..2796656	-	72	16331673	-	ssl1690	-	hypothetical protein
2508	 51.68	0	2797039..2797425	+	128	16331674	-	slr0921	-	hypothetical protein
2509	 52.65	0	2797422..2798006	+	194	16331675	pth	slr0922	-	peptidyl-tRNA hydrolase
2510	 51.33	0	2798072..2798410	+	112	16331676	-	slr0923	-	hypothetical protein
2511	 48.08	0	2798613..2799473	+	286	16331677	-	slr0924	-	hypothetical protein
2512	 54.29	+1	2799650..2801014	+	454	16331678	natB	slr0559	-	periplasmic binding protein of ABC transporter for natural amino acids
2513	 50.47	0	2801140..2803035	-	631	16331679	-	sll0556	-	hypothetical protein
2514	 56.11	+1	2803366..2804208	-	280	161344751	map	sll0555	-	methionine aminopeptidase
2515	 48.18	0	2804228..2804584	-	118	16331681	ftrC	sll0554	-	ferredoxin-thioredoxin reductase, catalytic chain
2516	 50.39	0	2804655..2805692	-	345	16331682	-	sll0553	-	hypothetical protein
2517	 46.15	0	2805608..2806114	-	168	16331683	-	sll0552	-	hypothetical protein
2518	 51.84	0	2806082..2807059	+	325	16331684	-	slr0565	-	hypothetical protein
2519	 50.29	0	2807211..2808932	-	573	16331685	-	sll0550	-	flavoprotein
2520	 52.80	0	2809055..2809804	-	249	16331686	-	sll0549	-	hypothetical protein
2521	 47.86	0	2810100..2811593	+	497	16331687	-	slr0569	-	hypothetical protein
2522	 48.27	0	2811628..2812290	-	220	16331688	-	sll0547	-	hypothetical protein
2523	 49.40	0	2812385..2812720	-	111	16331689	-	sll0546	-	translation initiation factor Sui1
2524	 45.09	0	2812914..2813636	-	240	16331690	-	sll0545	-	hypothetical protein
2525	 49.20	0	2813654..2814655	-	333	16331691	-	sll0544	-	DNA polymerase III subunit delta
2526	 40.14	-1	2815069..2815509	+	146	16331692	-	slr0572	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.