IslandPathversion 1.0

IslandPath Analysis: Synechocystis sp. PCC 6803



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.22 STD DEV: 4.98
Synechocystis sp. PCC 6803, complete genome - 1..3573470
3172 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1749	 54.59	+1	1919436..1919816	-	126	16330916	rpsL	sll1096	-	30S ribosomal protein S12
1750	 49.53	0	1919913..1920548	-	211	16330917	-	sll1095	-	hypothetical protein
1751	 51.19	0	1920660..1921919	+	419	16330918	purD	slr1159	-	phosphoribosylamine--glycine ligase
1752	 49.59	0	1922124..1922738	+	204	16330919	-	slr1160	-	hypothetical protein
1753	 51.85	0	1922791..1923087	-	98	16330920	rpiB	ssl2153	-	ribose phosphate isomerase B
1754	 39.27	-1	1923170..1923472	-	100	16330921	-	sll1094	-	transposase
1755	 39.17	-1	1924251..1924850	+	199	16330922	-	slr1161	-	hypothetical protein
1756	 33.97	-2	1924999..1925943	+	314	16330923	-	slr1162	-	hypothetical protein
1757	 46.02	0	1926030..1927700	+	556	16330924	-	slr1163	-	hypothetical protein
1758	 52.86	0	1927725..1928021	-	98	16330925	-	ssl2148	-	hypothetical protein
1759	 49.57	0	1928323..1930626	+	767	16330926	nrdA	slr1164	-	ribonucleotide reductase subunit alpha
1760	 54.65	+1	1931139..1932311	+	390	16330927	sat	slr1165	-	sulfate adenylyltransferase
1761	 50.80	0	1932354..1933418	+	354	16330928	-	slr1166	-	hypothetical protein
1762	 34.63	-2	1933468..1933854	-	128	16330929	-	sll1092	-	hypothetical protein
1763	 36.71	-2	1933854..1934060	-	68	16330930	-	ssl2138	-	hypothetical protein
1764	 51.57	0	1934307..1935386	-	359	16330931	-	sll1091	-	43 kD bacteriochlorophyll synthase subunit
1765	 51.90	0	1935912..1937069	+	385	16330932	gldA	slr1167	-	glycerol dehydrogenase
1766	 41.99	-1	1937086..1937397	+	103	16330933	-	slr1168	-	hypothetical protein
1767	 53.05	0	1937474..1938310	+	278	16330934	-	slr1169	-	hypothetical protein
1768	 51.98	0	1938429..1938782	+	117	16330935	-	slr1170	-	hypothetical protein
1769	 47.25	0	1938985..1939494	+	169	16330936	-	slr1171	-	glutathione peroxidase
1770	 49.84	0	1939865..1940506	-	213	16330937	-	sll1089	-	hypothetical protein
1771	 51.85	0	1940549..1942087	-	512	16330938	-	sll1087	-	sodium-coupled permease
1772	 50.43	0	1942234..1942701	-	155	16330939	-	sll1086	-	hypothetical protein
1773	 48.20	0	1942923..1944314	+	463	16330940	-	slr1173	-	hypothetical protein
1774	 53.11	0	1944345..1944521	+	58	16330941	-	ssr1951	-	hypothetical protein
1775	 49.05	0	1944586..1945374	+	262	16330942	-	slr1174	-	hypothetical protein
1776	 50.84	0	1945518..1947179	-	553	16330943	glpD	sll1085	-	glycerol-3-phosphate dehydrogenase
1777	 52.40	0	1947325..1948824	-	499	16330944	otsA	sll1566	-	alpha,alpha-trehalose-phosphate synthase
1778	 50.71	0	1949613..1952270	+	885	16330945	-	slr1670	-	hypothetical protein
1779	 51.55	0	1952323..1953810	+	495	16330946	glpK	slr1672	-	glycerol kinase
1780	 54.06	+1	1953791..1954615	+	274	16330947	spoU	slr1673	-	rRNA methylase
1781	 48.72	0	1954721..1955071	+	116	16330948	-	slr1674	-	hypothetical protein
1782	 52.05	0	1955221..1955562	+	113	16330949	hypA	slr1675	-	hydrogenase expression/formation protein; HypA
1783	 48.17	0	1955690..1956181	+	163	16330950	-	slr1676	-	hypothetical protein
1784	 52.24	0	1956260..1957486	+	408	16330951	-	slr1677	-	hypothetical protein
1785	 53.60	+1	1957758..1958132	+	124	16330952	rplU	slr1678	-	50S ribosomal protein L21
1786	 54.17	+1	1958240..1958503	+	87	16330953	rpmA	ssr2799	-	50S ribosomal protein L27
1787	 48.66	0	1958582..1959325	+	247	16330954	-	slr1679	-	hypothetical protein
1788	 51.28	0	1959436..1961079	-	547	16330955	leuA	sll1564	-	alpha-isopropylmalate/homocitrate synthase family transferase
1789	 45.06	0	1961439..1961600	+	53	16330956	-	ssr2802	-	ABC transporter
1790	 44.05	0	1961625..1961876	+	83	16330957	-	ssr2803	-	hypothetical protein
1791	 48.33	0	1962366..1962545	+	59	16330958	-	ssr2806	-	hypothetical protein
1792	 36.84	-2	1962705..1965524	-	939	16330959	-	sll1563	-	hypothetical protein
1793	 38.92	-1	1965485..1965949	-	154	16330960	-	sll1562	-	hypothetical protein
1794	 50.76	0	1966146..1969118	-	990	16330961	putA	sll1561	-	delta-1-pyrroline-5-carboxylate dehydrogenase
1795	 46.11	0	1969468..1970430	+	320	16330962	-	slr1681	-	hypothetical protein
1796	 32.11	-2	1970581..1970988	+	135	16330963	-	slr1682	-	transposase
1797	 32.06	-2	1970952..1971968	-	338	16330964	-	sll1560	-	transposase
1798	 35.35	-2	1972154..1972549	+	131	16330965	-	slr1683	-	transposase
1799	 30.46	-2	1972609..1973061	+	150	16330966	-	slr1684	-	transposase
1800	 51.00	0	1973611..1974765	-	384	16330967	-	sll1559	-	soluble hydrogenase 42 kD subunit
1801	 51.88	0	1975056..1975481	+	141	16330968	-	slr1686	-	hypothetical protein
1802	 48.67	0	1975575..1975874	-	99	16330969	-	ssl3044	-	hydrogenase component
1803	 53.85	+1	1976019..1976720	+	233	16330970	-	slr1687	-	hypothetical protein
1804	 50.21	0	1976799..1977965	-	388	16330971	-	sll1558	-	mannose-1-phosphate guanyltransferase
1805	 53.47	+1	1978131..1979039	-	302	16330972	sucD	sll1557	-	succinyl-CoA synthetase
1806	 53.81	+1	1979144..1980193	-	349	16330973	-	sll1556	-	isopentenyl pyrophosphate isomerase
1807	 50.32	0	1980365..1981471	-	368	16330974	-	sll1555	-	hybrid sensory kinase
1808	 49.33	0	1982049..1982273	+	74	16330975	psaE	ssr2831	-	photosystem I reaction center subunit IV
1809	 52.55	0	1982308..1983171	+	287	16330976	mutM	slr1689	-	formamidopyrimidine-DNA glycosylase
1810	 43.77	0	1983147..1983932	+	261	16330977	-	slr1690	-	hypothetical protein
1811	 47.58	0	1983982..1985658	+	558	16330978	nadE	slr1691	-	NAD synthetase
1812	 42.34	-1	1985874..1986872	+	332	16330979	-	slr1692	-	hypothetical protein
1813	 43.13	-1	1987100..1988242	+	380	16330980	-	slr1693	-	PatA subfamily protein
1814	 45.47	0	1988385..1988837	+	150	16330981	-	slr1694	-	activator of photopigment and puc expression
1815	 53.10	0	1988834..1991266	-	810	16330982	pheT	sll1553	-	phenylalanyl-tRNA synthetase subunit beta
1816	 50.61	0	1991550..1993274	+	574	16330983	pknA	slr1697	-	eukariotic protein kinase
1817	 51.57	0	1993377..1994045	-	222	16330984	-	sll0921	-	NarL subfamily protein
1818	 50.47	0	1994147..1997251	-	1034	16330985	ppc	sll0920	-	phosphoenolpyruvate carboxylase
1819	 53.59	+1	1997993..1998451	+	152	16330986	-	slr0935	-	hypothetical protein
1820	 52.48	0	1998460..1999347	+	295	16330987	nadC	slr0936	-	nicotinate-nucleotide pyrophosphorylase
1821	 49.84	0	1999477..2000730	+	417	16330988	-	slr0937	-	hypothetical protein
1822	 49.35	0	2000815..2002194	+	459	16330989	-	slr0938	-	hypothetical protein
1823	 50.76	0	2002241..2002894	-	217	16330990	cbiC	sll0916	-	precorrin-8X methylmutase
1824	 50.22	0	2002891..2004465	-	524	16330991	pqqE	sll0915	-	protease
1825	 50.41	0	2004626..2006095	+	489	16330992	crtQ	slr0940	-	zeta-carotene desaturase precursor
1826	 49.55	0	2006120..2006563	+	147	16330993	-	slr0941	-	hypothetical protein
1827	 49.39	0	2006824..2007807	+	327	16330994	-	slr0942	-	aldehyde reductase
1828	 49.72	0	2007850..2008752	+	300	16330995	fda	slr0943	-	fructose-1,6-bisphosphate aldolase
1829	 39.96	-1	2008874..2010004	-	376	16330996	-	sll0914	-	hypothetical protein
1830	 46.18	0	2010218..2011369	+	383	16330997	-	slr0944	-	hypothetical protein
1831	 50.08	0	2011521..2012141	+	206	16330998	-	slr0945	-	hypothetical protein
1832	 50.51	0	2012231..2012626	+	131	16330999	arsC	slr0946	-	arsenate reductase
1833	 54.61	+1	2012781..2013485	+	234	16331000	-	slr0947	-	OmpR subfamily
1834	 49.38	0	2013538..2014185	+	215	16331001	-	slr0948	-	hypothetical protein
1835	 45.21	0	2014182..2014787	-	201	16331002	-	sll0913	-	hypothetical protein
1836	 45.84	0	2014908..2016818	-	636	16331003	-	sll0912	-	ABC transporter
1837	 50.06	0	2017104..2017964	+	286	16331004	livH	slr0949	-	high-affinity branched-chain amino acid transport permease protein
1838	 52.85	0	2017964..2018788	+	274	16331005	-	slr0950	-	hypothetical protein
1839	 36.18	-2	2018851..2019237	-	128	16331006	-	sll0911	-	hypothetical protein
1840	 30.59	-2	2019253..2020344	-	363	16331007	-	sll0910	-	hypothetical protein
1841	 43.67	0	2020349..2021035	-	228	16331008	-	sll0909	-	hypothetical protein
1842	 51.66	0	2021252..2021944	+	230	16331009	ispD	slr0951	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1843	 49.23	0	2022028..2023071	+	347	16331010	fbp	slr0952	-	fructose-1,6-bisphosphatase
1844	 50.88	0	2023278..2024012	+	244	16331011	-	slr0953	-	hypothetical protein
1845	 48.36	0	2024264..2024476	+	70	16331012	-	ssr1600	-	hypothetical protein
1846	 53.01	0	2024549..2024980	+	143	16331013	-	slr0954	-	hypothetical protein
1847	 53.16	0	2024993..2026147	+	384	16331014	-	slr0955	-	hypothetical protein
1848	 50.64	0	2026227..2026538	+	103	16331015	-	slr0957	-	hypothetical protein
48.22	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.