IslandPathversion 1.0

IslandPath Analysis: Synechococcus elongatus PCC 6301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 55.98 STD DEV: 4.05
Synechococcus elongatus PCC 6301, complete genome - 1..2696255
2527 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
125	 57.31	0	135812..136249	-	145	56750134	rot	syc0125_c	-	peptidyl-prolyl cis-trans isomerase
126	 53.26	0	136626..137483	+	285	56750135	-	syc0126_d	-	hypothetical protein
127	 58.15	0	137532..137942	+	136	56750136	-	syc0127_d	-	hypothetical protein
128	 56.99	0	138205..139392	-	395	56750137	purK	syc0128_c	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
129	 53.87	0	139494..139829	-	111	56750138	rbcS	syc0129_c	-	ribulose bisphosphate carboxylase small subunit
130	 57.58	0	139920..141338	-	472	56750139	rbcL	syc0130_c	-	ribulose bisophosphate carboxylase
131	 56.32	0	141729..142559	-	276	56750140	ccmO	syc0131_c	-	carbon dioxide concentrating mechanism protein CcmO
132	 59.67	0	142601..143086	-	161	56750141	ccmN	syc0132_c	-	carbon dioxide concentrating mechanism protein
133	 57.84	0	143122..144741	-	539	56750142	ccmM	syc0133_c	-	carbon dioxide concentrating mechanism protein CcmM
134	 54.33	0	144807..145106	-	99	56750143	ccmL	syc0134_c	-	carbon dioxide concentrating mechanism protein CcmL
135	 56.31	0	145253..145561	-	102	56750144	ccmK	syc0135_c	-	putative carboxysome assembly protein
136	 54.68	0	145891..147291	-	466	56750145	chlN	syc0136_c	-	light-independent protochlorophyllide reductase subunit N
137	 48.55	-1	147355..148215	-	286	56750146	chlL	syc0137_c	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
138	 60.26	+1	148817..149800	-	327	56750147	-	syc0138_c	-	hypothetical protein
139	 57.13	0	149805..152456	-	883	56750148	topA	syc0139_c	-	DNA topoisomerase I
140	 54.66	0	152705..154270	+	521	56750149	ndhB	syc0140_d	-	NAD(P)H-quinone oxidoreductase subunit 2
141	 57.30	0	154366..155091	+	241	56750150	-	syc0141_d	-	ATP-binding protein of ABC transporter
142	 56.22	0	155104..155859	-	251	56750151	-	syc0142_c	-	hypothetical protein
143	 56.89	0	155983..156432	+	149	56750152	-	syc0143_d	-	hypothetical protein
144	 59.04	0	156442..157149	+	235	56750153	-	syc0144_d	-	hypothetical protein
145	 55.02	0	157229..158851	+	540	56750154	leuA	syc0145_d	-	2-isopropylmalate synthase
146	 56.79	0	158931..159953	-	340	56750155	-	syc0146_c	-	iron transport system substrate-binding protein
147	 41.67	-2	160245..160880	-	211	56750156	-	syc0147_c	-	membrane-associated protein
148	 56.56	0	161112..162743	-	543	56750157	futB	syc0148_c	-	iron(III) ABC transporter permease protein
149	 57.99	0	162891..163997	+	368	56750158	-	syc0149_d	-	iron(III)-transport ATP-binding protein
150	 59.09	0	164013..164540	-	175	56750159	-	syc0150_c	-	hypothetical protein
151	 58.84	0	164716..165405	+	229	56750160	-	syc0151_d	-	two-component response regulator
152	 57.89	0	165535..166206	+	223	56750161	-	syc0152_d	-	hydroxyacylglutathione hydrolase
153	 47.30	-2	166223..167482	-	419	56750162	-	syc0153_c	-	hypothetical protein
154	 53.44	0	167695..168072	+	125	56750163	-	syc0154_d	-	hypothetical protein
155	 53.83	0	168423..169544	+	373	56750164	-	syc0155_d	-	endo-1-beta-xylanase
156	 46.68	-2	169477..170712	+	411	56750165	-	syc0156_d	-	hypothetical protein
157	 42.96	-2	170730..172952	+	740	56750166	-	syc0157_d	-	UDP-glucose-beta-D-glucan glucosyltransferase
158	 53.10	0	173280..174650	-	456	56750167	-	syc0158_c	-	hypothetical protein
159	 53.49	0	174799..175056	+	85	56750168	-	syc0159_d	-	hypothetical protein
160	 54.05	0	175074..175493	-	139	56750169	-	syc0160_c	-	hypothetical protein
161	 55.90	0	175490..177253	-	587	56750170	-	syc0161_c	-	hypothetical protein
162	 55.63	0	177381..178295	-	304	56750171	-	syc0162_c	-	histone deacetylase/AcuC/AphA family protein
163	 49.26	-1	178817..182884	+	1355	56750172	-	syc0163_d	-	alkaline phosphatase
164	 56.40	0	183108..184646	-	512	56750173	comM	syc0164_c	-	competence protein ComM-like protein
165	 54.26	0	184692..185078	+	128	56750174	-	syc0165_d	-	protein kinase C inhibitor
166	 56.51	0	185180..186262	+	360	56750175	psbAII	syc0166_d	-	photosystem II D1 protein
167	 58.54	0	186428..187141	-	237	56750176	-	syc0167_c	-	carbonic anhydrase
168	 57.49	0	187120..187947	-	275	56750177	-	syc0168_c	-	hypothetical protein
169	 57.58	0	188040..189173	+	377	56750178	-	syc0169_d	-	hypothetical protein
170	 55.29	0	189261..189515	+	84	56750179	-	syc0170_d	-	hypothetical protein
171	 55.31	0	189517..190203	-	228	56750180	-	syc0171_c	-	hypothetical protein
172	 51.27	-1	190489..191001	+	170	56750181	ppa	syc0172_d	-	inorganic pyrophosphatase
173	 45.72	-2	191088..193226	-	712	56750182	-	syc0173_c	-	hypothetical protein
174	 48.32	-1	194189..194575	-	128	56750183	-	syc0174_c	-	ABC transporter
175	 51.86	-1	194583..196115	-	510	56750184	-	syc0175_c	-	ABC transporter ATP binding protein
176	 54.26	0	196197..197921	-	574	56750185	-	syc0176_c	-	high affinity sulfate transporter
177	 56.68	0	197964..199325	-	453	56750186	accC	syc0177_c	-	acetyl-CoA carboxylase biotin carboxylase subunit
178	 57.57	0	199633..200874	+	413	56750187	-	syc0178_d	-	hypothetical protein
179	 53.46	0	200921..203215	-	764	56750188	-	syc0179_c	-	GTP pyrophosphokinase
180	 57.70	0	203660..204094	+	144	56750189	-	syc0180_d	-	hypothetical protein
181	 57.47	0	204294..204815	+	173	56750190	-	syc0181_d	-	hypothetical protein
182	 58.15	0	204886..206517	+	543	56750191	rluA	syc0182_d	-	ribosomal large subunit pseudouridine synthase D
183	 48.71	-1	206818..207513	+	231	56750192	-	syc0183_d	-	hydrogenase accessory protein
184	 51.25	-1	207668..211240	-	1190	56750193	metH	syc0184_c	-	5-methyltetrahydrofolate--homocysteine methyltransferase
185	 56.76	0	211273..212595	+	440	56750194	-	syc0185_d	-	cation transporter
186	 57.67	0	212963..213562	-	199	56750195	recR	syc0186_c	-	recombination protein RecR
187	 57.44	0	213808..214143	-	111	56750196	-	syc0187_c	-	hypothetical protein
188	 57.75	0	214171..215538	-	455	56750197	-	syc0188_c	-	cytochrome P450
189	 55.70	0	215597..216508	+	303	56750198	menA	syc0189_d	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
190	 50.57	-1	216650..217438	+	262	56750199	-	syc0190_d	-	hypothetical protein
191	 53.48	0	217697..218113	-	138	56750200	-	syc0191_c	-	hypothetical protein
192	 54.94	0	218643..219128	-	161	56750201	-	syc0192_c	-	hypothetical protein
193	 53.17	0	219212..219715	-	167	56750202	-	syc0193_c	-	hypothetical protein
194	 56.83	0	219748..221058	-	436	56750203	-	syc0194_c	-	transcription regulator
195	 55.39	0	221301..222506	+	401	56750204	-	syc0195_d	-	hypothetical protein
196	 54.55	0	222922..223713	+	263	56750205	-	syc0196_d	-	hypothetical protein
197	 44.17	-2	224030..225940	+	636	56750206	-	syc0197_d	-	hypothetical protein
198	 49.80	-1	225956..229453	+	1165	56750207	phy	syc0198_d	-	phytochrome
199	 48.90	-1	229450..229905	+	151	56750208	-	syc0199_d	-	CheY family two-component response regulator
200	 45.05	-2	229902..232691	+	929	56750209	-	syc0200_d	-	two-component response regulator
201	 52.30	0	232717..234213	-	498	56750210	-	syc0201_c	-	putative export protein
202	 58.00	0	234720..235388	-	222	56750211	-	syc0202_c	-	hypothetical protein
203	 58.24	0	235638..237608	-	656	56750212	-	syc0203_c	-	acetyl-CoA synthetase
204	 58.68	0	237614..238414	+	266	56750213	-	syc0204_d	-	hypothetical protein
205	 56.33	0	238747..239433	+	228	56750214	-	syc0205_d	-	hypothetical protein
206	 55.42	0	239786..240781	+	331	56750215	ldhA	syc0206_d	-	D-lactate dehydrogenase
207	 50.96	-1	240875..241186	-	103	56750216	ndhE	syc0207_c	-	NADH dehydrogenase subunit K
208	 54.46	0	241205..241810	-	201	56750217	ndhG	syc0208_c	-	NADH dehydrogenase subunit J
209	 55.99	0	241814..242422	-	202	56750218	ndhI	syc0209_c	-	NADH dehydrogenase subunit I
210	 56.66	0	242465..243583	-	372	56750219	ndhA	syc0210_c	-	NADH dehydrogenase subunit H
211	 55.77	0	243798..244889	-	363	56750220	-	syc0211_c	-	GDP-mannose 46-dehydratase
212	 55.38	0	244959..245924	-	321	56750221	-	syc0212_c	-	hypothetical protein
213	 55.09	0	246161..246739	+	192	56750222	def	syc0213_d	-	peptide deformylase
214	 55.90	0	246827..247021	+	64	56750223	-	syc0214_d	-	hypothetical protein
215	 57.16	0	247086..247937	+	283	56750224	-	syc0215_d	-	hypothetical protein
216	 52.17	0	248085..252395	-	1436	56750225	-	syc0216_c	-	hypothetical protein
217	 51.52	-1	252457..252621	-	54	56750226	-	syc0217_c	-	hypothetical protein
218	 52.64	0	252614..253540	-	308	56750227	-	syc0218_c	-	hypothetical protein
219	 57.11	0	253830..254624	-	264	56750228	-	syc0219_c	-	branched-chain amino acid aminotransferase
220	 58.23	0	254621..256018	-	465	56750229	trpE	syc0220_c	-	anthranilate synthetase alpha-subunit
221	 60.34	+1	256015..256710	-	231	56750230	-	syc0221_c	-	transcription regulator
222	 57.65	0	256710..257330	-	206	56750231	-	syc0222_c	-	hypothetical protein
223	 56.50	0	257335..257511	-	58	56750232	-	syc0223_c	-	CAB/ELIP/HLIP superfamily protein
224	 57.14	0	257726..258292	-	188	56750233	-	syc0224_c	-	hypothetical protein
55.98	MEAN

4.05	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.