IslandPathversion 1.0

IslandPath Analysis: Streptococcus pneumoniae CGSP14



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.55 STD DEV: 4.71
Streptococcus pneumoniae CGSP14, complete genome - 1..2209198
2206 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1215	 33.03	-1	1199312..1199644	-	110	182684185	-	SPCG_1215	-	hypothetical protein
1216	 31.53	-1	1199830..1200438	-	202	182684186	-	SPCG_1216	-	hypothetical protein
1217	 34.17	-1	1200522..1202315	-	597	182684187	-	SPCG_1217	-	resolvase family site-specific recombinase
1218	 29.41	-2	1202765..1202968	-	67	182684188	-	SPCG_1218	-	hypothetical protein
1219	 40.74	0	1203392..1203607	+	71	182684189	-	SPCG_1219	-	degenerate transposase
1220	 41.07	0	1203732..1204106	+	124	182684190	-	SPCG_1220	-	degenerate transposase
1221	 43.61	0	1204091..1204411	+	106	182684191	-	SPCG_1221	-	degenerate transposase
1222	 32.82	-1	1205044..1205829	-	261	182684192	-	SPCG_1222	-	hypothetical protein
1223	 34.31	-1	1206088..1206699	-	203	182684193	-	SPCG_1223	-	daunorubicin resistance transmembrane protein
1224	 37.78	0	1206650..1207234	-	194	182684194	-	SPCG_1224	-	hypothetical protein
1225	 41.90	0	1207295..1207504	-	69	182684195	-	SPCG_1225	-	hypothetical protein
1226	 27.65	-2	1208658..1209449	-	263	182684196	-	SPCG_1226	-	hypothetical protein
1227	 31.87	-1	1209526..1211163	-	545	182684197	-	SPCG_1227	-	drug-resistant methionyl-tRNA synthetase
1228	 30.81	-1	1211231..1211905	-	224	182684198	-	SPCG_1228	-	chloramphenicol acetyltransferase
1229	 38.94	0	1212706..1213704	+	332	182684199	-	SPCG_1229	-	IS1239 transposase
1230	 41.11	0	1214276..1215136	-	286	182684200	-	SPCG_1230	-	DNA processing protein DprA, putative
1231	 35.80	0	1215220..1215909	-	229	182684201	-	SPCG_1231	-	licC protein
1232	 40.29	0	1215921..1216811	-	296	182684202	-	SPCG_1232	-	licB protein
1233	 35.06	0	1216789..1217658	-	289	182684203	pck	SPCG_1233	-	choline kinase
1234	 40.06	0	1217675..1218715	-	346	182684204	-	SPCG_1234	-	alcohol dehydrogenase, zinc-containing
1235	 38.98	0	1218702..1219409	-	235	182684205	ispD	SPCG_1235	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1236	 36.63	0	1219745..1221232	+	495	182684206	-	SPCG_1236	-	polysaccharide biosynthesis protein, putative
1237	 33.83	-1	1221242..1222045	+	267	182684207	licD1	SPCG_1237	-	licD1 protein
1238	 37.13	0	1222014..1222856	+	280	182684208	licD2	SPCG_1238	-	licD2 protein
1239	 44.35	+1	1223131..1226307	-	1058	182684209	carB	SPCG_1239	-	carbamoyl-phosphate synthase large subunit
1240	 43.98	0	1226620..1227699	-	359	182684210	carA	SPCG_1240	-	carbamoyl-phosphate synthase small subunit
1241	 43.07	0	1227749..1228672	-	307	182684211	pyrB	SPCG_1241	-	aspartate carbamoyltransferase catalytic subunit
1242	 41.38	0	1228691..1229212	-	173	182684212	pyrR	SPCG_1242	-	pyrimidine regulatory protein PyrR
1243	 44.44	+1	1229423..1230052	-	209	182684213	nth	SPCG_1243	-	endonuclease III
1244	 38.12	0	1230052..1230594	-	180	182684214	-	SPCG_1244	-	hypothetical protein
1245	 39.62	0	1231320..1232879	+	519	182684215	-	SPCG_1245	-	ABC transporter, ATP-binding protein
1246	 44.22	0	1233028..1233936	-	302	182684216	htpX	SPCG_1246	-	heat shock protein HtpX
1247	 39.22	0	1233929..1234489	-	186	182684217	lemA	SPCG_1247	-	hypothetical protein
1248	 41.33	0	1234559..1235296	+	245	182684218	gidB	SPCG_1248	-	glucose-inhibited division protein B
1249	 42.88	0	1235612..1236931	+	439	182684219	pyrP	SPCG_1249	-	uracil permease
1250	 43.77	0	1237126..1238697	-	523	182684220	ffh	SPCG_1250	-	signal recognition particle protein
1251	 38.74	0	1238709..1239041	-	110	182684221	-	SPCG_1251	-	hypothetical protein
1252	 37.83	0	1239132..1239509	-	125	182684223	-	SPCG_1252	-	hypothetical protein
1253	 44.11	0	1239485..1240885	+	466	182684222	-	SPCG_1253	-	hypothetical protein
1254	 45.23	+1	1240898..1241704	+	268	182684224	-	SPCG_1254	-	Cof family protein
1255	 29.56	-2	1241915..1243690	-	591	182684225	-	SPCG_1255	-	hypothetical protein
1256	 37.99	0	1244176..1245357	-	393	182684226	-	SPCG_1256	-	choline binding protein PcpA
1257	 35.46	0	1245370..1246590	-	406	182684227	-	SPCG_1257	-	pneumococcal surface protein A
1258	 24.10	-2	1246618..1247538	+	306	182684228	-	SPCG_1258	-	rgg protein, putative
1259	 28.38	-2	1247770..1247991	-	73	182684229	-	SPCG_1259	-	hypothetical protein
1260	 42.82	0	1248218..1248565	-	115	182684230	rplS	SPCG_1260	-	50S ribosomal protein L19
1261	 37.58	0	1248684..1249013	-	109	182684231	crcB	SPCG_1261	-	crcB protein
1262	 42.40	0	1249007..1249381	-	124	182684232	crcB	SPCG_1262	-	crcB protein
1263	 37.08	0	1249378..1249644	-	88	182684233	-	SPCG_1263	-	hypothetical protein
1264	 41.89	0	1249760..1250203	-	147	182684234	flaV	SPCG_1264	-	flavodoxin
1265	 44.20	0	1250295..1251242	+	315	182684235	-	SPCG_1265	-	DHH subfamily 1 protein
1266	 42.11	0	1251296..1251580	+	94	182684236	rpmE	SPCG_1266	-	50S ribosomal protein L31
1267	 39.93	0	1251637..1252242	-	201	182684237	-	SPCG_1267	-	hypothetical protein
1268	 42.69	0	1252190..1253194	-	334	182684238	-	SPCG_1268	-	hypothetical protein
1269	 39.84	0	1253246..1253368	-	40	182684239	-	SPCG_1269	-	hypothetical protein
1270	 42.96	0	1253365..1253499	-	44	182684240	-	SPCG_1270	-	hypothetical protein
1271	 32.29	-1	1253749..1253844	-	31	182684241	-	SPCG_1271	-	hypothetical protein
1272	 43.06	0	1254186..1255532	+	448	182684242	gdhA	SPCG_1272	-	glutamate dehydrogenase
1273	 27.24	-2	1255821..1259432	-	1203	182684243	-	SPCG_1273	-	glutamate dehydrogenase
1274	 30.64	-1	1259712..1260899	-	395	182684244	-	SPCG_1274	-	site-specific recombinase
1275	 29.13	-2	1260871..1261179	-	102	182684245	-	SPCG_1275	-	hypothetical protein
1276	 28.31	-2	1261741..1263570	-	609	182684246	-	SPCG_1276	-	Tn5252, relaxase
1277	 28.14	-2	1263557..1263922	-	121	182684247	-	SPCG_1277	-	Tn5252, ORF 9 protein
1278	 30.25	-1	1263927..1264283	-	118	182684248	-	SPCG_1278	-	Tn5252, ORF 10 protein
1279	 27.06	-2	1264667..1264921	-	84	182684249	-	SPCG_1279	-	hypothetical protein
1280	 31.66	-1	1264987..1268991	-	1334	182684250	-	SPCG_1280	-	DNA-dependent ATPase I and helicase II
1281	 31.01	-1	1269113..1269499	-	128	182684251	-	SPCG_1281	-	hypothetical protein
1282	 32.60	-1	1269571..1270521	-	316	182684252	-	SPCG_1282	-	hypothetical protein
1283	 27.52	-2	1270606..1271724	-	372	182684253	-	SPCG_1283	-	hypothetical protein
1284	 28.16	-2	1271986..1273821	-	611	182684254	-	SPCG_1284	-	hypothetical protein
1285	 28.32	-2	1274199..1274477	-	92	182684255	-	SPCG_1285	-	hypothetical protein
1286	 31.35	-1	1274452..1275156	-	234	182684256	-	SPCG_1286	-	phosphoserine phosphatase
1287	 28.22	-2	1275209..1275775	-	188	182684257	-	SPCG_1287	-	hypothetical protein
1288	 27.56	-2	1275868..1276092	-	74	182684258	-	SPCG_1288	-	hypothetical protein
1289	 28.64	-2	1276181..1276798	-	205	182684259	-	SPCG_1289	-	hypothetical protein
1290	 30.98	-1	1277120..1277842	-	240	182684260	-	SPCG_1290	-	hypothetical protein
1291	 26.07	-2	1278159..1279094	+	311	182684261	-	SPCG_1291	-	putative replication initiation protein Rep(RC)
1292	 30.41	-1	1279959..1280609	-	216	182684262	-	SPCG_1292	-	chloramphenicol acetyltransferase
1293	 28.51	-2	1280780..1281028	-	82	182684263	-	SPCG_1293	-	hypothetical protein
1294	 30.29	-1	1281267..1282055	-	262	182684264	-	SPCG_1294	-	hypothetical protein
1295	 36.89	0	1282531..1283289	-	252	182684265	-	SPCG_1295	-	hypothetical protein
1296	 32.70	-1	1283289..1283765	-	158	182684266	-	SPCG_1296	-	transcriptional regulator, putative
1297	 31.50	-1	1283835..1284107	-	90	182684267	-	SPCG_1297	-	hypothetical protein
1298	 33.07	-1	1284145..1284528	-	127	182684268	-	SPCG_1298	-	hypothetical protein
1299	 39.32	0	1284525..1284758	-	77	182684269	-	SPCG_1299	-	hypothetical protein
1300	 34.44	-1	1284809..1285894	-	361	182684270	-	SPCG_1300	-	hypothetical protein
1301	 35.36	0	1285904..1286545	-	213	182684271	-	SPCG_1301	-	parvulin-like peptidyl-prolyl isomerase
1302	 27.27	-2	1286705..1286902	+	65	182684272	-	SPCG_1302	-	hypothetical protein
1303	 33.33	-1	1286916..1287233	-	105	182684273	-	SPCG_1303	-	hypothetical protein
1304	 38.25	0	1287226..1287510	-	94	182684274	-	SPCG_1304	-	hypothetical protein
1305	 36.75	0	1287585..1293818	-	2077	182684275	-	SPCG_1305	-	SNF2 family protein
1306	 38.44	0	1293851..1294261	-	136	182684276	-	SPCG_1306	-	hypothetical protein
1307	 35.34	0	1294413..1295108	-	231	182684277	-	SPCG_1307	-	hypothetical protein
1308	 39.05	0	1295217..1298030	-	937	182684278	-	SPCG_1308	-	hypothetical protein
1309	 37.13	0	1298042..1300357	-	771	182684279	-	SPCG_1309	-	hypothetical protein
1310	 34.16	-1	1300347..1300709	-	120	182684280	-	SPCG_1310	-	hypothetical protein
1311	 39.18	0	1300763..1301617	-	284	182684281	-	SPCG_1311	-	hypothetical protein
1312	 41.56	0	1301634..1301876	-	80	182684282	-	SPCG_1312	-	hypothetical protein
1313	 36.74	0	1301897..1303777	-	626	182684283	-	SPCG_1313	-	hypothetical protein
1314	 36.67	0	1303774..1304283	-	169	182684284	-	SPCG_1314	-	hypothetical protein
39.55	MEAN

4.71	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.