IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
247	 32.91	0	294411..295127	+	238	161508513	ispD2	USA300HOU_0262	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
248	 34.80	0	295120..296145	+	341	161508514	-	USA300HOU_0263	-	alcohol dehydrogenase
249	 32.86	0	296167..297861	+	564	161508515	tagB1	USA300HOU_0264	-	glycosyl/glycerophosphate transferase
250	 33.42	0	298289..299458	+	389	161508516	tagF	USA300HOU_0265	-	CDP-glycerol glycerophosphotransferase
251	 32.22	0	299734..300450	+	238	161508517	-	USA300HOU_0266	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
252	 33.53	0	300443..301468	+	341	161508518	-	USA300HOU_0267	-	zinc (Zn2+)-binding dehydrogenase
253	 31.91	0	301490..303178	+	562	161508519	tagB2	USA300HOU_0268	-	glycosyl/glycerophosphate transferase
254	 31.94	0	303211..304935	+	574	161508520	-	USA300HOU_0269	-	glycosyltransferase
255	 32.74	0	305075..305749	+	224	161508521	scdA	USA300HOU_0270	-	cell wall biosynthesis protein ScdA
256	 35.56	0	305996..307750	+	584	161508522	lytS	USA300HOU_0271	-	sensor histidine kinase LytS
257	 32.25	0	307753..308493	+	246	161508523	lytR	USA300HOU_0272	-	response regulator LytR
258	 34.46	0	308606..309049	+	147	161508524	lrgA	USA300HOU_0273	-	murein hydrolase regulator LrgA
259	 36.61	+1	309042..309743	+	233	161508525	lrgB	USA300HOU_0274	-	antiholin-like protein LrgB
260	 33.48	0	309851..310555	-	234	161508526	-	USA300HOU_0275	-	GntR family transcriptional regulator
261	 34.85	0	310704..311495	+	263	161508527	-	USA300HOU_0276	-	PTS family glucose/glucoside (glc) porter component IIABC
262	 36.81	+1	311511..312947	+	478	161508528	bglA	USA300HOU_0277	-	6-phospho-beta-glucosidase
263	 37.50	+1	313019..313210	+	63	161508529	-	USA300HOU_0278	-	hypothetical protein
264	 34.38	0	313381..314142	-	253	161508530	-	USA300HOU_0279	-	hypothetical protein
265	 37.60	+1	314393..315307	-	304	161508531	rbsK	USA300HOU_0280	-	ribokinase
266	 31.85	0	315335..315739	-	134	161508532	rbsD	USA300HOU_0281	-	D-ribose pyranase
267	 38.32	+1	315754..316635	-	293	161508533	-	USA300HOU_0282	-	DMT superfamily drug/metabolite transporter
268	 37.34	+1	316867..317865	-	332	161508534	-	USA300HOU_0283	-	ribose operon repressor
269	 19.44	-2	318016..318195	+	59	161508535	-	USA300HOU_0284	-	hypothetical protein
270	 26.72	-1	318245..318637	+	130	161508536	-	USA300HOU_0285	-	hypothetical protein
271	 30.37	0	318865..319269	+	134	161508537	-	USA300HOU_0286	-	transposase
272	 37.52	+1	319310..320695	-	461	161508538	-	USA300HOU_0287	-	major facilitator transporter
273	 35.35	0	320920..321912	+	330	161508539	-	USA300HOU_0288	-	C59 family penicillin amidase
274	 39.73	+1	322220..323188	+	322	161508540	lytM	USA300HOU_0289	-	peptidoglycan hydrolase
275	 31.36	0	323240..323899	-	219	161508541	-	USA300HOU_0290	-	ABC transporter ATP-binding protein
276	 31.60	0	323913..324833	-	306	161508542	-	USA300HOU_0291	-	hypothetical protein
277	 31.88	0	324830..325996	-	388	161508543	-	USA300HOU_0292	-	hypothetical protein
278	 28.41	-1	326064..327587	-	507	161508544	-	USA300HOU_0293	-	hypothetical protein
279	 27.83	-1	327858..328511	+	217	161508545	-	USA300HOU_0294	-	hypothetical protein
280	 28.06	-1	328545..329132	+	195	161508546	-	USA300HOU_0295	-	hypothetical protein
281	 37.32	+1	329275..330177	-	300	161508547	-	USA300HOU_0296	-	hypothetical protein
282	 37.76	+1	330416..330709	+	97	161508548	esxA	USA300HOU_0297	-	hypothetical protein
283	 30.89	0	330793..333822	+	1009	161508549	esaA	USA300HOU_0298	-	hypothetical protein
284	 32.68	0	333822..334280	+	152	161508550	essA	USA300HOU_0299	-	virulence protein EssA
285	 29.63	0	334252..334494	+	80	161508551	esaB	USA300HOU_0300	-	virulence protein EsaB
286	 29.89	0	334507..335841	+	444	161508552	essB	USA300HOU_0301	-	hypothetical protein
287	 34.01	0	335863..340302	+	1479	161508553	essC	USA300HOU_0302	-	virulence protein EssC
288	 31.04	0	340332..340724	+	130	161508554	esaC	USA300HOU_0303	-	virulence protein EsaC
289	 39.05	+1	340740..341054	+	104	161508555	esxB	USA300HOU_0304	-	virulence protein EsxB
290	 29.50	0	341051..341728	+	225	161508556	-	USA300HOU_0305	-	hypothetical protein
291	 37.11	+1	341728..342045	+	105	161508557	-	USA300HOU_0306	-	hypothetical protein
292	 35.72	0	342055..343899	+	614	161508558	-	USA300HOU_0307	-	hypothetical protein
293	 28.66	-1	343910..344401	+	163	161508559	-	USA300HOU_0308	-	hypothetical protein
294	 26.90	-1	344609..345292	+	227	161508560	-	USA300HOU_0309	-	hypothetical protein
295	 28.10	-1	345439..346050	+	203	161508561	-	USA300HOU_0310	-	hypothetical protein
296	 26.94	-1	346186..346404	+	72	161508562	-	USA300HOU_0311	-	hypothetical protein
297	 30.54	0	346536..347036	+	166	161508563	-	USA300HOU_0312	-	hypothetical protein
298	 28.34	-1	347047..347547	+	166	161508564	-	USA300HOU_0313	-	hypothetical protein
299	 29.88	0	348064..348555	+	163	161508565	-	USA300HOU_0315	-	hypothetical protein
300	 28.36	-1	348765..349448	+	227	161508566	-	USA300HOU_0316	-	hypothetical protein
301	 29.94	0	350034..350534	+	166	161508567	-	USA300HOU_0317	-	hypothetical protein
302	 30.34	0	350546..351046	+	166	161508568	-	USA300HOU_0318	-	hypothetical protein
303	 29.74	0	351568..352068	+	166	161508569	-	USA300HOU_0319	-	hypothetical protein
304	 29.86	0	352079..352567	+	162	161508570	-	USA300HOU_0320	-	hypothetical protein
305	 30.70	0	352588..352701	+	37	161508571	-	USA300HOU_0321	-	hypothetical protein
306	 26.46	-1	353187..353564	+	125	161508572	-	USA300HOU_0322	-	hypothetical protein
307	 31.58	0	353717..354115	+	132	161508573	-	USA300HOU_0323	-	hypothetical protein
308	 33.33	0	354331..355176	-	281	161508574	-	USA300HOU_0324	-	FNT family formate-nitrite transporter
309	 35.86	0	355392..356699	-	435	161508575	brnQ1	USA300HOU_0325	-	LIVCS family branched chain amino acid:cation symporter
310	 24.58	-2	356620..356859	+	79	161508576	-	USA300HOU_0326	-	hypothetical protein
311	 33.11	0	357283..358173	+	296	161508577	-	USA300HOU_0327	-	acid phosphatase
312	 33.43	0	358422..359471	+	349	161508578	-	USA300HOU_0328	-	ABC transporter ATP-binding protein
313	 33.48	0	359484..360161	+	225	161508579	-	USA300HOU_0329	-	ABC transporter ATP-binding protein
314	 38.57	+1	360369..361400	+	343	161508580	-	USA300HOU_0330	-	PfoR family transcriptional regulator
315	 34.05	0	361743..362861	+	372	161508581	-	USA300HOU_0331	-	PfkB family carbohydrate kinase
316	 38.10	+1	362836..363759	+	307	161508582	-	USA300HOU_0332	-	hypothetical protein
317	 32.68	0	363770..364990	+	406	161508583	-	USA300HOU_0333	-	nucleoside transporter
318	 36.01	0	365095..366627	-	510	161508584	-	USA300HOU_0334	-	SSS family solute/sodium (Na+) symporter
319	 35.03	0	366667..367548	-	293	161508585	nanA	USA300HOU_0335	-	N-acetylneuraminate lyase
320	 37.10	+1	367664..368566	+	300	161508586	-	USA300HOU_0336	-	transcriptional regulator
321	 33.33	0	368844..369644	-	266	161508587	-	USA300HOU_0337	-	transcriptional regulator
322	 37.67	+1	369784..370452	+	222	161508588	nanE	USA300HOU_0338	-	N-acetylmannosamine-6-phosphate 2-epimerase
323	 36.05	0	370579..371940	-	453	161508589	-	USA300HOU_0339	-	hypothetical protein
324	 37.43	+1	372310..374382	+	690	161508590	lip1	USA300HOU_0340	-	triacylglycerol lipase
325	 34.18	0	374624..375451	-	275	161508591	-	USA300HOU_0341	-	hypothetical protein
326	 39.42	+1	375524..376723	-	399	161508592	-	USA300HOU_0342	-	FMN reductase
327	 22.58	-2	376819..376911	+	30	161508593	-	USA300HOU_0343	-	hypothetical protein
328	 37.43	+1	377025..378026	+	333	161508594	-	USA300HOU_0344	-	alkanal monooxygenase (FMN-linked)
329	 36.34	0	378060..378392	+	110	161508595	-	USA300HOU_0345	-	glycine cleavage system H-protein
330	 35.96	0	378393..379193	+	266	161508596	-	USA300HOU_0346	-	hypothetical protein
331	 37.88	+1	379183..380127	+	314	161508597	-	USA300HOU_0347	-	Sir2 silent information regulator family NAD-dependent deacetylase
332	 34.41	0	380105..381127	+	340	161508598	lplA1	USA300HOU_0348	-	lipoate--protein ligase A
333	 35.58	0	381442..382467	+	341	161508599	-	USA300HOU_0349	-	dehydrogenase
334	 37.86	+1	382560..383906	-	448	161508600	-	USA300HOU_0350	-	ascorbate-specific PTS system enzyme IIC
335	 34.35	0	383921..384214	-	97	161508601	-	USA300HOU_0351	-	PTS family porter component IIB
336	 35.36	0	384207..384650	-	147	161508602	-	USA300HOU_0352	-	PTS family porter component IIA
337	 34.36	0	384655..386610	-	651	161508603	-	USA300HOU_0353	-	transcription antiterminator
338	 33.57	0	386822..387241	+	139	161508604	-	USA300HOU_0354	-	transcriptional regulator
339	 33.04	0	387348..388703	+	451	161508605	-	USA300HOU_0355	-	MATE family multi-antimicrobial extrusion protein
340	 30.39	0	388807..389247	+	146	161508606	-	USA300HOU_0356	-	hypothetical protein
341	 37.09	+1	389330..390688	-	452	161508607	glpT	USA300HOU_0357	-	MOP superfamily multidrug/oligosaccharidyl-lipid/polysaccharide flippase transporter
342	 34.41	0	390996..391922	+	308	161508608	-	USA300HOU_0358	-	lactoylglutathione lyase
343	 37.01	+1	391936..392997	+	353	161508609	-	USA300HOU_0359	-	alkanal monooxygenase
344	 33.69	0	393011..393577	+	188	161508610	-	USA300HOU_0360	-	FMN reductase
345	 35.34	0	393637..394632	-	331	161508611	-	USA300HOU_0361	-	hypothetical protein
346	 39.14	+1	394631..395026	+	131	161508612	-	USA300HOU_0362	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.