IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus JH9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.08 STD DEV: 3.28
Staphylococcus aureus subsp. aureus JH9, complete genome - 1..2906700
2697 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1278	 32.30	0	1341723..1345289	+	1188	148267725	-	SaurJH9_1293	-	chromosome segregation protein SMC
1279	 34.77	0	1345289..1346539	+	416	148267726	-	SaurJH9_1294	-	signal recognition particle-docking protein FtsY
1280	 27.63	-1	1346526..1346858	+	110	148267727	-	SaurJH9_1295	-	hypothetical protein
1281	 34.65	0	1346884..1348251	+	455	148267728	-	SaurJH9_1296	-	signal recognition particle protein
1282	 36.23	0	1348686..1348961	+	91	148267729	rpsP	SaurJH9_1297	-	30S ribosomal protein S16
1283	 31.75	0	1349149..1349652	+	167	148267730	-	SaurJH9_1298	-	16S rRNA processing protein RimM
1284	 35.50	0	1349652..1350389	+	245	148267731	-	SaurJH9_1299	-	tRNA (guanine-N1)-methyltransferase
1285	 39.03	+1	1350492..1350842	+	116	148267732	rplS	SaurJH9_1300	-	50S ribosomal protein L19
1286	 29.80	0	1351086..1353692	-	868	148267733	-	SaurJH9_1301	-	membrane protein-like protein
1287	 33.11	0	1354093..1354977	+	294	148267734	rbgA	SaurJH9_1302	-	ribosomal biogenesis GTPase
1288	 35.03	0	1354961..1355728	+	255	148267735	-	SaurJH9_1303	-	ribonuclease H
1289	 35.39	0	1355837..1357003	+	388	148267736	sucC	SaurJH9_1304	-	succinyl-CoA synthetase subunit beta
1290	 38.17	+1	1357025..1357933	+	302	148267737	-	SaurJH9_1305	-	succinyl-CoA synthetase subunit alpha
1291	 29.13	-1	1358160..1359278	+	372	148267738	-	SaurJH9_1306	-	CHAP domain-containing protein
1292	 25.86	-2	1359306..1360550	+	414	148267739	-	SaurJH9_1307	-	methicillin resistance protein
1293	 35.12	0	1361771..1363846	+	691	148267740	-	SaurJH9_1310	-	DNA topoisomerase I
1294	 35.55	0	1364002..1365309	+	435	148267741	-	SaurJH9_1311	-	tRNA (uracil-5-)-methyltransferase Gid
1295	 32.11	0	1365727..1366623	+	298	148267742	-	SaurJH9_1312	-	tyrosine recombinase XerC
1296	 39.38	+1	1366620..1367165	+	181	148267743	-	SaurJH9_1313	-	ATP-dependent protease peptidase subunit
1297	 34.90	0	1367231..1368634	+	467	148267744	hslU	SaurJH9_1314	-	ATP-dependent protease ATP-binding subunit
1298	 31.91	0	1368659..1369432	+	257	148267745	-	SaurJH9_1315	-	transcriptional repressor CodY
1299	 35.16	0	1369779..1370546	+	255	148267746	rpsB	SaurJH9_1316	-	30S ribosomal protein S2
1300	 36.51	+1	1370728..1371609	+	293	148267747	tsf	SaurJH9_1317	-	elongation factor Ts
1301	 36.38	+1	1371746..1372468	+	240	148267748	-	SaurJH9_1318	-	uridylate kinase
1302	 34.95	0	1372487..1373041	+	184	148267749	-	SaurJH9_1319	-	ribosome recycling factor
1303	 29.96	0	1373414..1374184	+	256	148267750	-	SaurJH9_1320	-	undecaprenyl diphosphate synthase
1304	 32.44	0	1374191..1374973	+	260	148267751	-	SaurJH9_1321	-	phosphatidate cytidylyltransferase
1305	 33.26	0	1375185..1376471	+	428	148267752	-	SaurJH9_1322	-	putative membrane-associated zinc metalloprotease
1306	 34.98	0	1376491..1378194	+	567	148267753	-	SaurJH9_1323	-	prolyl-tRNA synthetase
1307	 34.89	0	1378452..1382768	+	1438	148267754	-	SaurJH9_1324	-	DNA polymerase III PolC
1308	 32.69	0	1383058..1383525	+	155	148267755	-	SaurJH9_1325	-	hypothetical protein
1309	 35.46	0	1383546..1384721	+	391	148267756	nusA	SaurJH9_1326	-	transcription elongation factor NusA
1310	 30.18	0	1384742..1385026	+	94	148267757	-	SaurJH9_1327	-	hypothetical protein
1311	 32.39	0	1385023..1385340	+	105	148267758	-	SaurJH9_1328	-	ribosomal protein L7Ae/L30e/S12e/Gadd45
1312	 34.14	0	1385345..1387462	+	705	148267759	infB	SaurJH9_1329	-	translation initiation factor IF-2
1313	 30.28	0	1387806..1388198	+	130	148267760	rbfA	SaurJH9_1330	-	ribosome-binding factor A
1314	 32.24	0	1388367..1389284	+	305	148267761	-	SaurJH9_1331	-	tRNA pseudouridine synthase B
1315	 32.92	0	1389299..1390270	+	323	148267762	-	SaurJH9_1332	-	riboflavin biosynthesis protein RibF
1316	 35.93	0	1390385..1390654	+	89	148267763	rpsO	SaurJH9_1333	-	30S ribosomal protein S15
1317	 37.29	+1	1391023..1393119	+	698	148267764	-	SaurJH9_1334	-	polynucleotide phosphorylase/polyadenylase
1318	 33.62	0	1393304..1395028	+	574	148267765	-	SaurJH9_1335	-	beta-lactamase domain-containing protein
1319	 33.59	0	1395285..1397651	+	788	148267766	-	SaurJH9_1336	-	cell divisionFtsK/SpoIIIE
1320	 31.37	0	1397656..1398369	+	237	148267767	-	SaurJH9_1337	-	GntR family transcriptional regulator
1321	 29.70	-1	1398400..1399665	+	421	148267768	-	SaurJH9_1338	-	peptidase M16 domain-containing protein
1322	 31.00	0	1399665..1400951	+	428	148267769	-	SaurJH9_1339	-	peptidase M16 domain-containing protein
1323	 34.04	0	1400951..1401655	+	234	148267770	-	SaurJH9_1340	-	short-chain dehydrogenase/reductase SDR
1324	 33.33	0	1401760..1402587	+	275	148267771	-	SaurJH9_1341	-	amino acid-binding ACT domain-containing protein
1325	 30.53	0	1402606..1402998	+	130	148267772	-	SaurJH9_1342	-	helix-turn-helix domain-containing protein
1326	 30.57	0	1403032..1403610	+	192	148267773	-	SaurJH9_1343	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1327	 30.73	0	1403834..1404985	+	383	148267774	-	SaurJH9_1344	-	competence/damage-inducible protein CinA
1328	 36.97	+1	1405150..1406193	+	347	148267775	recA	SaurJH9_1345	-	recombinase A
1329	 35.83	0	1406547..1408106	+	519	148267776	-	SaurJH9_1346	-	phosphodiesterase
1330	 27.31	-1	1408403..1408618	-	71	148267777	-	SaurJH9_1347	-	hypothetical protein
1331	 34.59	0	1408792..1409589	+	265	148267778	-	SaurJH9_1348	-	hypothetical protein
1332	 35.21	0	1409729..1411489	+	586	148267779	-	SaurJH9_1349	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
1333	 34.03	0	1411490..1412356	+	288	148267780	-	SaurJH9_1350	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1334	 30.61	0	1412450..1412743	+	97	148267781	-	SaurJH9_1351	-	hypothetical protein
1335	 32.82	0	1412877..1414421	+	514	148267782	-	SaurJH9_1352	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1336	 29.78	-1	1414422..1414787	+	121	148267783	-	SaurJH9_1353	-	hypothetical protein
1337	 34.15	0	1414814..1415305	+	163	148267784	-	SaurJH9_1354	-	hypothetical protein
1338	 32.19	0	1415608..1418226	+	872	148267785	-	SaurJH9_1355	-	DNA mismatch repair protein
1339	 29.10	-1	1420255..1420797	+	180	148267786	-	SaurJH9_1357	-	glycerol uptake operon antiterminator regulatory protein
1340	 37.73	+1	1421272..1422090	+	272	148267787	-	SaurJH9_1358	-	MIP family channel protein
1341	 36.34	0	1422219..1423715	+	498	148267788	glpK	SaurJH9_1359	-	glycerol kinase
1342	 34.26	0	1423825..1425546	+	573	148267789	-	SaurJH9_1360	-	aerobic glycerol-3-phosphate dehydrogenase
1343	 30.17	0	1425693..1426610	+	305	148267790	-	SaurJH9_1361	-	alpha/beta hydrolase fold
1344	 31.84	0	1426628..1427563	+	311	148267791	-	SaurJH9_1362	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1345	 34.19	0	1427578..1427811	+	77	148267792	-	SaurJH9_1363	-	RNA chaperone Hfq
1346	 33.33	0	1428033..1428509	-	158	148267793	-	SaurJH9_1364	-	glutathione peroxidase
1347	 31.56	0	1428621..1429859	+	412	148267794	-	SaurJH9_1365	-	GTP-binding protein, HSR1-related
1348	 35.11	0	1429878..1431116	+	412	148267795	-	SaurJH9_1366	-	hypothetical protein
1349	 32.52	0	1431359..1431727	+	122	148267796	-	SaurJH9_1367	-	MerR family transcriptional regulator
1350	 35.05	0	1431746..1433086	+	446	148267797	-	SaurJH9_1368	-	glutamine synthetase, type I
1351	 23.47	-2	1434475..1434687	+	70	148267798	-	SaurJH9_1369	-	hypothetical protein
1352	 23.67	-2	1434981..1435187	+	68	148267799	-	SaurJH9_1370	-	hypothetical protein
1353	 26.88	-1	1436421..1436606	+	61	148267800	-	SaurJH9_1371	-	hypothetical protein
1354	 25.71	-2	1437117..1437221	+	34	148267801	-	SaurJH9_1372	-	hypothetical protein
1355	 25.40	-2	1437349..1437600	+	83	148267802	-	SaurJH9_1373	-	hypothetical protein
1356	 21.54	-2	1438323..1438517	+	64	148267803	-	SaurJH9_1376	-	hypothetical protein
1357	 33.62	0	1439061..1440116	-	351	148267804	-	SaurJH9_1377	-	hypothetical protein
1358	 22.22	-2	1440356..1440553	+	65	148267805	-	SaurJH9_1378	-	hypothetical protein
1359	 31.55	0	1440574..1442091	+	505	148267806	-	SaurJH9_1379	-	phospholipase D/transphosphatidylase
1360	 27.00	-1	1442275..1443174	+	299	148267807	-	SaurJH9_1380	-	ABC transporter related
1361	 27.87	-1	1443143..1443874	+	243	148267808	-	SaurJH9_1381	-	ABC-2 type transporter
1362	 26.65	-1	1443878..1444969	+	363	148267809	-	SaurJH9_1382	-	integral membrane sensor signal transduction histidine kinase
1363	 29.85	0	1444966..1445568	+	200	148267810	-	SaurJH9_1383	-	two component LuxR family transcriptional regulator
1364	 26.98	-1	1445681..1445869	-	62	148267811	-	SaurJH9_1384	-	hypothetical protein
1365	 31.94	0	1445969..1446541	+	190	148267812	-	SaurJH9_1385	-	thermonuclease
1366	 29.24	-1	1446686..1447540	-	284	148267813	-	SaurJH9_1386	-	hypothetical protein
1367	 29.74	-1	1447862..1448446	+	194	148267814	-	SaurJH9_1387	-	hypothetical protein
1368	 31.45	0	1448500..1449882	-	460	148267815	-	SaurJH9_1388	-	aspartate kinase
1369	 32.47	0	1450073..1451353	+	426	148267816	-	SaurJH9_1389	-	homoserine dehydrogenase
1370	 34.93	0	1451359..1452420	+	353	148267817	-	SaurJH9_1390	-	threonine synthase
1371	 35.96	0	1452422..1453336	+	304	148267818	-	SaurJH9_1391	-	homoserine kinase
1372	 33.58	0	1453394..1454197	+	267	148267819	-	SaurJH9_1392	-	Cof-like hydrolase
1373	 30.48	0	1454490..1454804	-	104	148267820	-	SaurJH9_1393	-	hypothetical protein
1374	 33.20	0	1455022..1456476	-	484	148267821	-	SaurJH9_1394	-	amino acid permease-associated region
1375	 36.10	0	1456680..1458197	+	505	148267822	-	SaurJH9_1395	-	catalase
1376	 33.33	0	1458288..1458437	+	49	148267823	rpmG	SaurJH9_1396	-	50S ribosomal protein L33
1377	 32.59	0	1458891..1459160	+	89	148267824	rpsN	SaurJH9_1397	-	30S ribosomal protein S14
33.08	MEAN

3.28	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.