IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3981	 49.76	0	4552259..4553932	-	557	74314599	yjdB	SSON_4289	-	putative cell division protein
3982	 54.19	0	4554006..4555343	-	445	74314600	yjdE	SSON_4290	-	arginine:agmatin antiporter
3983	 41.34	-2	4555480..4556241	-	253	74314601	adiY	SSON_4291	-	putative ARAC-type regulatory protein
3984	 52.62	0	4556566..4558836	-	756	74314602	adiA	SSON_4292	-	biodegradative arginine decarboxylase
3985	 50.06	0	4559032..4559940	-	302	74314603	melR	SSON_4293	-	DNA-binding transcriptional regulator MelR
3986	 51.99	0	4560223..4561578	+	451	74314604	melA	SSON_4294	-	alpha-galactosidase
3987	 55.19	0	4562949..4563854	+	301	161986387	-	SSON_4296	-	insertion element IS2 transposase InsD
3988	 54.37	0	4564850..4565353	+	167	74314606	-	SSON_4297	-	IS1 ORF
3989	 53.88	0	4565288..4565983	-	231	74314607	yjdF	SSON_4298	-	hypothetical protein
3990	 54.16	0	4566106..4567752	-	548	74314608	fumB	SSON_4299	-	fumarase B
3991	 52.50	0	4567830..4569170	-	446	74314609	dcuB	SSON_4300	-	anaerobic C4-dicarboxylate transporter
3992	 49.17	0	4569741..4570460	-	239	74314610	yjdG	SSON_4301	-	DNA-binding transcriptional activator DcuR
3993	 50.18	0	4570457..4572088	-	543	74314611	yjdH	SSON_4302	-	sensory histidine kinase DcuS
3994	 48.48	0	4572269..4572499	+	76	74314612	yjdI	SSON_4303	-	hypothetical protein
3995	 41.76	-2	4572511..4572783	+	90	74314613	yjdJ	SSON_4304	-	hypothetical protein
3996	 34.34	-2	4573010..4573306	+	98