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Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3846 51.96 0 4378785..4380185 - 466 161986400 udhA SSON_4135 - soluble pyridine nucleotide transhydrogenase 3847 52.48 0 4380452..4381156 + 234 74314465 yijC SSON_4136 - DNA-binding transcriptional repressor FabR 3848 49.17 0 4381156..4381515 + 119 74314466 yijD SSON_4137 - hypothetical protein 3849 50.95 0 4381555..4382655 - 366 74314467 trmA SSON_4138 - tRNA (uracil-5-)-methyltransferase 3850 50.14 0 4383024..4384868 + 614 74314468 btuB SSON_4139 - vitamin B12/cobalamin outer membrane transporter 3851 51.40 0 4384813..4385670 + 285 161986399 murI SSON_4140 - glutamate racemase 3852 46.36 -1 4391188..4392216 + 342 74314470 murB SSON_4145 - UDP-N-acetylenolpyruvoylglucosamine reductase 3853 49.69 0 4392213..4393178 + 321 74314471 birA SSON_4146 - biotin--protein ligase 3854 44.37 -1 4393207..4394157 - 316 74314472 coaA SSON_4147 - pantothenate kinase 3855 39.74 -2 4394344..4394499 - 51 74314473 - SSON_4148 - hypothetical protein 3856 53.16 0 4395075..4396259 + 394 74314474 tufB SSON_4153 - elongation factor Tu 3857 55.21 0 4396489..4396872 + 127 74314475 secE SSON_4154 - preprotein translocase subunit SecE 3858 51.47 0 4396874..4397419 + 181 74314476 nusG SSON_4155 - transcription antitermination protein NusG 3859 51.98 0 4397578..4398006 + 142 74314477 rplK SSON_4156 - 50S ribosomal protein L11 3860 51.77 0 4398010..4398714 + 234 74314478 rplA SSON_4157 - 50S ribosomal protein L1 3861 52.21 0 4399127..4399624 + 165 74314479 rplJ SSON_4158 - 50S ribosomal protein L10 3862 46.17 -1 4399691..4400056 + 121 74314480 rplL SSON_4159 - 50S ribosomal protein L7/L12 3863 52.69 0 4400376..4404404 + 1342 74314481 rpoB SSON_4160 - DNA-directed RNA polymerase subunit beta 3864 53.91 0 4404481..4408704 + 1407 74314482 rpoC SSON_4161 - DNA-directed RNA polymerase subunit beta' 3865 54.94 0 4408946..4410079 - 377 74314483 thiH SSON_4162 - thiamine biosynthesis protein ThiH 3866 57.98 +1 4410076..4410846 - 256 161986398 thiG SSON_4163 - thiazole synthase 3867 55.22 0 4410848..4411048 - 66 74314485 thiS SSON_4164 - sulfur carrier protein ThiS 3868 56.75 +1 4411032..4411787 - 251 161986397 thiF SSON_4165 - hypothetical protein 3869 58.02 +1 4411780..4412415 - 211 74314487 thiE SSON_4166 - thiamine-phosphate pyrophosphorylase 3870 55.75 0 4412415..4414310 - 631 74314488 thiC SSON_4167 - thiamine biosynthesis protein ThiC 3871 49.48 0 4414544..4415020 - 158 74314489 yjaE SSON_4168 - anti-RNA polymerase sigma 70 factor 3872 53.10 0 4415115..4415888 + 257 74314490 nudC SSON_4169 - NADH pyrophosphatase 3873 55.87 +1 4415928..4416992 + 354 74314491 hemE SSON_4170 - uroporphyrinogen decarboxylase 3874 58.48 +1 4417002..4417673 + 223 161986396 nfi SSON_4171 - endonuclease V 3875 48.39 0 4417716..4418306 + 196 74314493 yjaG SSON_4172 - hypothetical protein 3876 47.99 0 4418493..4418765 + 90 74314494 hupA SSON_4173 - transcriptional regulator HU subunit alpha 3877 53.45 0 4418778..4419473 + 231 74314495 yjaH SSON_4174 - hypothetical protein 3878 53.52 0 4419475..4419900 - 141 161986395 zraP SSON_4175 - zinc resistance protein 3879 54.76 0 4420138..4421514 + 458 74314497 hydH SSON_4176 - sensor protein ZraS 3880 56.71 +1 4421511..4422836 + 441 74314498 hydG SSON_4177 - transcriptional regulatory protein ZraR 3881 58.22 +1 4422833..4424122 - 429 74314499 purD SSON_4178 - phosphoribosylamine--glycine ligase 3882 56.16 +1 4424134..4425723 - 529 74314500 purH SSON_4179 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3883 53.15 0 4431465..4431908 - 147 74314501 yjaB SSON_4184 - hypothetical protein 3884 50.54 0 4432065..4432994 + 309 74314502 metA SSON_4185 - homoserine O-succinyltransferase 3885 51.91 0 4433263..4434705 + 480 74314503 aceB SSON_4186 - malate synthase 3886 55.44 0 4434894..4436006 + 370 74314504 aceA SSON_4187 - isocitrate lyase 3887 54.17 0 4436210..4436713 - 167 74314505 - SSON_4188 - IS1 ORF 3888 53.94 0 4438274..4439098 - 274 161986394 iclR SSON_4189 - transcriptional repressor IclR 3889 55.89 +1 4439298..4442981 + 1227 74314507 metH SSON_4190 - B12-dependent methionine synthase 3890 55.39 0 4443201..4444832 + 543 74314508 yjbB SSON_4191 - putative alpha helix protein 3891 54.93 0 4444923..4445612 - 229 74314509 pepE SSON_4192 - peptidase E 3892 53.67 0 4445995..4447110 - 371 74314510 sorE SSON_4193 - putative L-sorbose-1-P-reductase 3893 54.67 0 4447275..4448099 - 274 74314511 sorM SSON_4194 - putative sorbose-permease PTS system IID component 3894 53.13 0 4448110..4448907 - 265 74314512 sorA SSON_4195 - putative sorbose-permease PTS system IIC component 3895 52.45 0 4449467..4449874 - 135 74314513 sorF SSON_4197 - putative sorbose-permease PTS system IIA component 3896 51.43 0 4449884..4450690 - 268 74314514 sorD SSON_4198 - sorbitol-6-phosphate 2-dehydrogenase 3897 51.89 0 4451945..4452817 + 290 74314515 yjbC SSON_4200 - 23S rRNA pseudouridine synthase F 3898 50.18 0 4452950..4453222 - 90 74314516 yjbD SSON_4201 - hypothetical protein 3899 54.15 0 4453474..4454823 - 449 74314517 lysC SSON_4202 - aspartate kinase III 3900 51.70 0 4455348..4456997 + 549 74314518 pgi SSON_4203 - glucose-6-phosphate isomerase 3901 60.08 +2 4457459..4457701 + 80 74314519 yjbE SSON_4204 - hypothetical protein 3902 54.26 0 4457785..4458453 + 222 74314520 yjbF SSON_4205 - hypothetical protein 3903 57.99 +1 4458450..4459187 + 245 74314521 yjbG SSON_4206 - hypothetical protein 3904 54.17 0 4459187..4461283 + 698 74314522 yjbH SSON_4207 - hypothetical protein 3905 48.91 0 4461878..4462288 + 136 74314523 yjbA SSON_4208 - phosphate-starvation-inducible protein PsiE 3906 48.98 0 4462332..4463807 - 491 74314524 xylE SSON_4209 - D-xylose transporter XylE 3907 54.55 0 4464179..4465069 - 296 74314525 malG SSON_4210 - maltose transporter permease 3908 52.56 0 4465084..4466628 - 514 74314526 malF SSON_4211 - maltose transporter membrane protein 3909 50.97 0 4466782..4467972 - 396 74314527 malE SSON_4212 - maltose ABC transporter periplasmic protein 3910 55.11 0 4468337..4469452 + 371 74314528 malK SSON_4213 - maltose/maltodextrin transporter ATP-binding protein 3911 51.83 0 4469524..4470864 + 446 74314529 lamB SSON_4214 - maltoporin 3912 53.53 0 4471016..4471936 + 306 74314530 malM SSON_4215 - maltose regulon periplasmic protein 3913 51.08 0 4473023..4474042 - 339 74314531 - SSON_4216 - putative transposase 3914 49.38 0 4475258..4476385 - 375 74314532 - SSON_4218 - putative transposase 3915 52.41 0 4476929..4477426 + 165 161986393 ubiC SSON_4219 - chorismate pyruvate lyase 3916 51.43 0 4477439..4478311 + 290 74314534 ubiA SSON_4220 - 4-hydroxybenzoate octaprenyltransferase 3917 55.28 0 4478466..4480889 - 807 161986392 plsB SSON_4221 - glycerol-3-phosphate acyltransferase 3918 51.76 0 4481060..4481428 + 122 74314536 dgkA SSON_4222 - diacylglycerol kinase 3919 52.22 0 4481538..4482146 + 202 74314537 lexA SSON_4223 - LexA repressor 3920 55.43 0 4482219..4483544 + 441 161986391 dinF SSON_4224 - DNA-damage-inducible SOS response protein 3921 42.38 -2 4483660..4483869 + 69 74314539 yjbJ SSON_4225 - putative stress-response protein 3922 52.91 0 4483911..4484426 - 171 161986390 yjbK SSON_4226 - zinc uptake transcriptional repressor 3923 28.63 -2 4484744..4484998 + 84 74314541 yjbL SSON_4227 - hypothetical protein 3924 36.72 -2 4485022..4485729 + 235 74314542 yjbM SSON_4228 - hypothetical protein 3925 53.47 0 4486092..4487129 + 345 74314543 yjbN SSON_4229 - tRNA-dihydrouridine synthase A 3926 49.79 0 4487263..4487505 + 80 161986389 pspG SSON_4230 - phage shock protein G 3927 52.85 0 4487671..4488654 - 327 74314545 qor SSON_4231 - quinone oxidoreductase, NADPH-dependent 3928 53.60 0 4488737..4490152 + 471 74314546 dnaB SSON_4232 - replicative DNA helicase 3929 55.37 0 4490205..4491284 + 359 74314547 alr SSON_4233 - alanine racemase 3930 52.68 0 4491537..4492730 + 397 74314548 tyrB SSON_4234 - aromatic amino acid aminotransferase 3931 49.30 0 4493858..4494571 + 237 74314549 aphA SSON_4235 - acid phosphatase/phosphotransferase 3932 51.56 0 4494682..4495098 + 138 74314550 yjbQ SSON_4236 - hypothetical protein 3933 50.42 0 4495102..4495458 + 118 74314551 yjbR SSON_4237 - hypothetical protein 3934 55.58 0 4495493..4498315 - 940 74314552 uvrA SSON_4238 - excinuclease ABC subunit A 3935 58.10 +1 4498569..4499105 + 178 74314553 ssb SSON_4239 - single-strand DNA-binding protein 3936 44.68 -1 4499914..4501500 + 528 74314554 yjcC SSON_4241 - hypothetical protein 3937 50.93 0 4501503..4501826 - 107 74314555 soxS SSON_4242 - DNA-binding transcriptional regulator SoxS 3938 54.37 0 4502202..4502705 + 167 74314556 - SSON_4243 - IS1 ORF 3939 55.82 0 4504217..4505866 - 549 74314557 yjcE SSON_4245 - hypothetical protein 3940 56.07 +1 4506018..4507367 - 449 74314558 yjcD SSON_4246 - hypothetical protein 3941 51.63 0 4507913..4508311 - 132 74314559 soxR SSON_4247 - redox-sensing activator of soxS 3942 54.37 0 4508360..4508863 - 167 74314560 - SSON_4248 - IS1 ORF 3943 55.58 0 4509248..4510897 - 549 74314561 actP SSON_4249 - acetate permease 3944 56.81 +1 4511407..4513365 - 652 74314562 acs SSON_4250 - acetyl-CoA synthetase 3945 52.54 0 4513759..4515195 + 478 74314563 nrfA SSON_4251 - cytochrome c nitrite reductase 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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