IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3766	 49.72	0	4284801..4286234	+	477	74314384	-	SSON_4051	-	putative transporter
3767	 46.59	-1	4286333..4287682	+	449	74314385	shiA	SSON_4052	-	putative transport protein shikimate
3768	 49.77	0	4287672..4288559	+	295	74314386	-	SSON_4053	-	hypothetical protein
3769	 50.67	0	4288700..4289299	+	199	161986406	yihX	SSON_4054	-	phosphatase
3770	 50.74	0	4289293..4290165	+	290	74314388	rbn	SSON_4055	-	ribonuclease BN
3771	 55.25	0	4290162..4290599	+	145	74314389	yihZ	SSON_4056	-	D-tyrosyl-tRNA deacylase
3772	 54.65	0	4290596..4291585	+	329	74314390	yiiD	SSON_4057	-	putative acetyltransferase
3773	 54.37	0	4291647..4292150	-	167	74314391	-	SSON_4058	-	IS1 ORF
3774	 45.27	-1	4293217..4293459	+	80	74314392	yiiF	SSON_4059	-	hypothetical protein
3775	 55.48	0	4293789..4294718	-	309	74314393	fdhE	SSON_4060	-	formate dehydrogenase accessory protein FdhE
3776	 52.52	0	4294715..4295350	-	211	74314394	fdoI	SSON_4061	-	formate dehydrogenase-O subunit gamma
3777	 55.81	0	4295347..4296249	-	300	74314395	fdoH	SSON_4062	-	formate dehydrogenase-O, iron-sulfur subunit
3778	 55.20	0	4296262..4299312	-	1016	74314396	fdoG	SSON_4063	-	formate dehydrogenase-O, major subunit
3779	 53.00	0	4299506..4300339	+	277	74314397	fdhD	SSON_4064	-	formate dehydrogenase accessory protein
3780	 54.37	0	4301497..4302000	+	167	74314398	-	SSON_4066	-	IS1 ORF
3781	 49.86	0	4302358..4304106	-	582