IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3752	 51.66	0	4267073..4267705	-	210	161986408	yihA	SSON_4037	-	GTPase EngB
3753	 52.55	0	4268287..4268796	+	169	74314371	yihI	SSON_4038	-	hypothetical protein
3754	 53.06	0	4268985..4270358	+	457	161986407	hemN	SSON_4039	-	coproporphyrinogen III oxidase
3755	 56.60	+1	4270770..4272179	-	469	74314373	glnG	SSON_4040	-	nitrogen regulation protein NR(I)
3756	 55.24	0	4272191..4273240	-	349	74314374	glnL	SSON_4041	-	nitrogen regulation protein NR(II)
3757	 52.77	0	4273414..4274823	-	469	74314375	glnA	SSON_4042	-	glutamine synthetase
3758	 53.47	0	4275322..4277019	+	565	74314376	yihK	SSON_4043	-	putative GTP-binding factor
3759	 53.82	0	4277124..4278470	+	448	74314377	-	SSON_4044	-	IS4 orf
3760	 49.94	0	4278563..4279351	-	262	74314378	yihW	SSON_4045	-	putative DEOR-type transcriptional regulator
3761	 53.90	0	4279526..4280872	-	448	74314379	-	SSON_4046	-	IS4 orf
3762	 50.62	0	4280922..4281725	-	267	74314380	yihV	SSON_4047	-	putative kinase
3763	 51.76	0	4281898..4282776	+	292	74314381	yihU	SSON_4048	-	putative dehydrogenase
3764	 51.46	0	4282801..4283688	+	295	74314382	yihT	SSON_4049	-	putative aldolase
3765	 52.72	0	4283721..4284731	+	336	74314383	rspB	SSON_4050	-	putative dehydrogenase
3766	 49.72	0	4284801..4286234	+	477	74314384	-	SSON_4051	-	putative transporter
3767	 46.59	-1	4286333..4287682	+	449