IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3677	 50.00	0	4176397..4176780	+	127	74314295	trxA	SSON_3952	-	thioredoxin
3678	 49.02	0	4176921..4177022	+	33	74314296	rhoL	SSON_3953	-	putative Rho operon leader peptide
3679	 50.32	0	4177107..4178366	+	419	74314297	rho	SSON_3954	-	transcription termination factor Rho
3680	 41.10	-2	4178376..4178594	+	72	74314298	-	SSON_3955	-	hypothetical protein
3681	 49.37	0	4178606..4179709	+	367	74314299	rfe	SSON_3956	-	UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase
3682	 52.48	0	4179718..4180767	+	349	74314300	wzzE	SSON_3957	-	lipopolysaccharide biosynthesis protein WzzE
3683	 52.26	0	4180781..4181953	+	390	74314301	wecB	SSON_3958	-	UDP-N-acetyl glucosamine-2-epimerase
3684	 53.92	0	4181950..4183212	+	420	74314302	wecC	SSON_3959	-	UDP-N-acetyl-D-mannosamine dehydrogenase
3685	 53.65	0	4183212..4184279	+	355	74314303	rffG	SSON_3960	-	dTDP-glucose 4,6-dehydratase
3686	 55.10	0	4184298..4185179	+	293	74314304	rffH	SSON_3961	-	glucose-1-phosphate thymidylyltransferase
3687	 54.03	0	4185286..4185831	+	181	74314305	wecD	SSON_3962	-	TDP-fucosamine acetyltransferase
3688	 54.64	0	4185836..4186966	+	376	74314306	wecE	SSON_3963	-	TDP-4-oxo-6-deoxy-D-glucose transaminase
3689	 53.40	0	4186968..4188218	+	416	74314307	wzxE	SSON_3964	-	putative cytochrome
3690	 52.41	0	4188215..4189294	+	359	74314308	yifM	SSON_3965	-	4-alpha-L-fucosyltransferase
3691	 52.70	0	4189291..4190643	+	450	74314309	wecF	SSON_3966	-	putative entero common