IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3622	 53.31	0	4092534..4094075	+	513	74314240	atpA	SSON_3885	-	F0F1 ATP synthase subunit alpha
3623	 53.12	0	4094126..4094989	+	287	74314241	atpG	SSON_3886	-	F0F1 ATP synthase subunit gamma
3624	 54.88	0	4095016..4096398	+	460	74314242	atpD	SSON_3887	-	F0F1 ATP synthase subunit beta
3625	 55.24	0	4096419..4096838	+	139	74314243	atpC	SSON_3888	-	F0F1 ATP synthase subunit epsilon
3626	 52.81	0	4097189..4098559	+	456	74314244	glmU	SSON_3889	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
3627	 53.72	0	4098721..4100550	+	609	74314245	glmS	SSON_3890	-	D-fructose-6-phosphate amidotransferase
3628	 38.53	-2	4100934..4101530	+	198	74314246	-	SSON_3891	-	putative transposase
3629	 44.00	-1	4101517..4103625	+	702	74314247	-	SSON_3892	-	putative transposase
3630	 43.65	-1	4103622..4105289	+	555	74314248	tnsC	SSON_3893	-	ATP-binding protein
3631	 45.19	-1	4105292..4106818	+	508	74314249	tnsD	SSON_3894	-	transposition protein
3632	 42.41	-2	4106927..4108435	+	502	74314250	tnsE	SSON_3895	-	transposition regulatory protein
3633	 53.11	0	4110458..4111246	-	262	74314251	aadA	SSON_3896	-	aminoglycoside resistance protein
3634	 53.90	0	4114725..4116071	+	448	74314252	-	SSON_3898	-	IS4 orf
3635	 47.64	0	4116363..4116935	+	190	74314253	lpfA	SSON_3899	-	putative major fimbrial subunit
3636	 37.62	-2	4116983..4117285	+	100	74314254	-	SSON_3900	-	putative fimbrial chaperone
3637	 54.37	0	4