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Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2632 52.27 0 2968250..2969242 + 330 74313250 proX SSON_2824 - glycine betaine transporter periplasmic subunit 2633 54.77 0 2969533..2970717 + 394 74313251 - SSON_2825 - permease 2634 52.57 0 2970841..2971578 + 245 74313252 - SSON_2826 - hypothetical protein 2635 55.36 0 2971568..2971903 + 111 74313253 ygaH SSON_2827 - hypothetical protein 2636 49.15 0 2971994..2972524 + 176 74313254 emrR SSON_2828 - transcriptional repressor MprA 2637 53.11 0 2972651..2973823 + 390 74313255 emrA SSON_2829 - multidrug resistance secretion protein 2638 56.47 +1 2973840..2975378 + 512 74313256 emrB SSON_2830 - membrane translocase 2639 51.55 0 2975442..2975957 - 171 74313257 ygaG SSON_2831 - S-ribosylhomocysteinase 2640 51.25 0 2976107..2977663 - 518 74313258 gshA SSON_2832 - glutamate--cysteine ligase 2641 49.18 0 2977736..2978164 - 142 74313259 - SSON_2833 - hypothetical protein 2642 53.44 0 2978161..2978727 - 188 74313260 yqaB SSON_2834 - fructose-1-phosphatase 2643 49.46 0 2980051..2980236 - 61 74313261 csrA SSON_2840 - carbon storage regulator 2644 53.67 0 2980471..2983101 - 876 74313262 alaS SSON_2841 - alanyl-tRNA synthetase 2645 50.70 0 2983229..2983729 - 166 74313263 recX SSON_2842 - recombination regulator RecX 2646 53.86 0 2983957..2985018 - 353 74313264 recA SSON_2843 - recombinase A 2647 56.63 +1 2985098..2985595 - 165 74313265 ygaD SSON_2844 - competence damage-inducible protein A 2648 55.06 0 2985740..2986825 - 361 74313266 mltB SSON_2845 - murein hydrolase B 2649 50.18 0 2987081..2987644 + 187 74313267 srlA SSON_2846 - PTS system, glucitol/sorbitol-specific IIC component, one of two 2650 54.69 0 2987641..2988600 + 319 74313268 srlE SSON_2847 - PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components 2651 55.65 0 2988611..2988982 + 123 74313269 srlB SSON_2848 - glucitol/sorbitol-specific PTS system component IIA 2652 54.44 0 2989859..2990218 + 119 74313270 gutM SSON_2850 - DNA-binding transcriptional activator GutM 2653 47.93 0 2990285..2991058 + 257 74313271 srlR SSON_2851 - DNA-bindng transcriptional repressor SrlR 2654 56.94 +1 2991051..2992016 + 321 161986464 gutQ SSON_2852 - D-arabinose 5-phosphate isomerase 2655 56.90 +1 2992013..2993527 - 504 161986463 ygaA SSON_2853 - anaerobic nitric oxide reductase transcription regulator 2656 53.19 0 2993714..2995153 + 479 74313274 - SSON_2854 - anaerobic nitric oxide reductase flavorubredoxin 2657 54.23 0 2995150..2996283 + 377 74313275 ygbD SSON_2855 - nitric oxide reductase 2658 57.92 +1 2996411..2998663 - 750 74313276 hypF SSON_2856 - transcriptional regulatory protein 2659 52.08 0 2998816..2999343 - 175 74313277 hydN SSON_2857 - electron transport protein HydN 2660 52.86 0 2999491..3000504 - 337 74313278 ascG SSON_2858 - ascBF operon repressor 2661 56.38 +1 3000761..3002218 + 485 74313279 ascF SSON_2859 - cellobiose/arbutin/salicin-specific PTS system components IIBC 2662 52.14 0 3002227..3003651 + 474 74313280 ascB SSON_2860 - cryptic 6-phospho-beta-glucosidase 2663 46.43 -1 3003765..3004184 - 139 74313281 - SSON_2861 - hypothetical protein 2664 42.31 -2 3004181..3004492 - 103 74313282 - SSON_2862 - putative cytoplasmic protein 2665 50.65 0 3004654..3005427 - 257 74313283 - SSON_2863 - putative periplasmic or exported protein 2666 53.08 0 3005452..3005922 - 156 74313284 hycI SSON_2864 - hydrogenase 3 maturation protease 2667 52.80 0 3005915..3006325 - 136 74313285 hycH SSON_2865 - HycH 2668 56.64 +1 3006322..3007089 - 255 74313286 hycG SSON_2866 - hydrogenase activity 2669 55.99 +1 3007089..3007631 - 180 74313287 hycF SSON_2867 - formate hydrogenlyase complex iron-sulfur subunit 2670 57.07 +1 3007641..3009338 - 565 74313288 hycE SSON_2868 - large subunit of hydrogenase 3 2671 58.33 +1 3009356..3010279 - 307 74313289 hycD SSON_2869 - membrane-spanning protein of hydrogenase 3 (part of FHL complex) 2672 57.74 +1 3010282..3012108 - 608 74313290 hycC SSON_2870 - formate hydrogenlyase subunit 3 2673 56.37 +1 3012105..3012716 - 203 74313291 hycB SSON_2871 - small subunit of hydrogenase-3, iron-sulfur protein 2674 49.78 0 3012841..3013302 - 153 74313292 hycA SSON_2872 - formate hydrogenlyase regulatory protein HycA 2675 52.71 0 3013514..3013864 + 116 74313293 hypA SSON_2873 - hydrogenase nickel incorporation protein 2676 55.56 0 3013868..3014740 + 290 74313294 hypB SSON_2874 - hydrogenase nickel incorporation protein HypB 2677 54.95 0 3014731..3015003 + 90 74313295 hypC SSON_2875 - hydrogenase isoenzymes formation protein 2678 55.17 0 3015003..3016124 + 373 74313296 hypD SSON_2876 - pleiotrophic effects on 3 hydrogenase isozymes 2679 57.17 +1 3016163..3017131 + 322 74313297 hypE SSON_2877 - hypothetical protein 2680 50.56 0 3019319..3019672 - 117 74313298 ygbA SSON_2879 - hypothetical protein 2681 56.48 +1 3019959..3022520 + 853 74313299 mutS SSON_2880 - DNA mismatch repair protein 2682 54.17 0 3023059..3023562 - 167 74313300 - SSON_2882 - IS1 ORF 2683 51.50 0 3024110..3024907 - 265 74313301 ygbI SSON_2883 - putative DEOR-type transcriptional regulator 2684 53.25 0 3025073..3025981 + 302 74313302 - SSON_2884 - putative dehydrogenase 2685 54.87 0 3025978..3027240 + 420 74313303 - SSON_2885 - hypothetical protein 2686 53.52 0 3027237..3027875 + 212 74313304 ygbL SSON_2886 - putative aldolase 2687 51.35 0 3027880..3028656 + 258 74313305 ygbM SSON_2887 - hypothetical protein 2688 51.87 0 3028745..3030109 + 454 74313306 - SSON_2888 - inner membrane permease YgbN 2689 51.86 0 3030203..3031195 - 330 74313307 rpoS SSON_2889 - RNA polymerase sigma factor RpoS 2690 52.28 0 3031258..3032397 - 379 74313308 nlpD SSON_2890 - lipoprotein NlpD 2691 53.59 0 3032537..3033163 - 208 74313309 pcm SSON_2891 - protein-L-isoaspartate O-methyltransferase 2692 55.12 0 3033157..3033918 - 253 74313310 surE SSON_2892 - stationary phase survival protein SurE 2693 52.10 0 3033899..3034948 - 349 74313311 truD SSON_2893 - tRNA pseudouridine synthase D 2694 53.75 0 3034945..3035424 - 159 74313312 ispF SSON_2894 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2695 55.27 0 3035424..3036134 - 236 74313313 ispD SSON_2895 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2696 51.92 0 3036153..3036464 - 103 74313314 ftsB SSON_2896 - cell division protein FtsB 2697 48.15 0 3036658..3036981 - 107 74313315 ygbE SSON_2897 - hypothetical protein 2698 51.98 0 3037031..3037636 - 201 74313316 cysC SSON_2898 - adenylylsulfate kinase 2699 54.48 0 3037636..3039063 - 475 74313317 cysN SSON_2899 - sulfate adenylyltransferase subunit 1 2700 53.36 0 3039065..3039973 - 302 74313318 cysD SSON_2900 - sulfate adenylyltransferase subunit 2 2701 49.04 0 3040225..3041262 + 345 74313319 iap SSON_2901 - alkaline phosphatase isozyme conversion aminopeptidase 2702 48.30 0 3041530..3041823 - 97 74313320 ygbF SSON_2902 - hypothetical protein 2703 56.05 +1 3042740..3043144 - 134 74313321 ygcH SSON_2904 - putative cytoplasmic protein 2704 57.73 +1 3043455..3044651 + 398 74313322 - SSON_2905 - ISSfl2 ORF 2705 53.68 0 3044822..3045568 - 248 74313323 - SSON_2906 - putative cytoplasmic protein 2706 49.43 0 3045579..3046634 - 351 74313324 yghJ SSON_2907 - putative cytoplasmic protein 2707 53.26 0 3046646..3046906 - 86 74313325 - SSON_2908 - hypothetical protein 2708 46.20 -1 3047037..3047339 + 100 74313326 - SSON_2909 - IS600 ORF1 2709 52.10 0 3047480..3048193 + 237 74313327 - SSON_2910 - IS600 ORF2 2710 51.39 0 3048234..3048449 - 71 74313328 - SSON_2911 - hypothetical protein 2711 45.76 -1 3048446..3048775 - 109 74313329 - SSON_2912 - hypothetical protein 2712 51.52 0 3048793..3050007 - 404 74313330 - SSON_2913 - putative cytoplasmic protein 2713 50.79 0 3050105..3052762 - 885 74313331 ygcB SSON_2914 - putative helicase 2714 50.20 0 3053416..3054150 - 244 74313332 cysH SSON_2915 - phosphoadenosine phosphosulfate reductase 2715 56.04 +1 3054225..3055937 - 570 74313333 cysI SSON_2916 - sulfite reductase subunit beta 2716 56.83 +1 3055937..3057736 - 599 74313334 cysJ SSON_2917 - sulfite reductase subunit alpha 2717 49.45 0 3058052..3058417 + 121 74313335 ygcM SSON_2918 - putative 6-pyruvoyl tetrahydrobiopterin synthase 2718 55.07 0 3058465..3059766 + 433 74313336 ygcN SSON_2919 - hypothetical protein 2719 55.89 +1 3059721..3060017 + 98 74313337 ygcO SSON_2920 - hypothetical protein 2720 46.70 -1 3060034..3060609 + 191 74313338 ygcP SSON_2921 - putative anti-terminator regulatory protein 2721 55.37 0 3060757..3061650 - 297 74313339 ygcQ SSON_2922 - putative flavoprotein 2722 55.73 0 3061614..3062399 - 261 74313340 ygcR SSON_2923 - putative transport protein 2723 53.19 0 3062371..3063780 - 469 74313341 ygcS SSON_2924 - putative transport protein 2724 50.82 0 3063802..3064596 - 264 74313342 - SSON_2925 - hypothetical protein 2725 49.53 0 3066460..3067737 + 425 74313343 yqcE SSON_2927 - putative transport protein 2726 54.37 0 3069449..3069952 - 167 74313344 - SSON_2929 - IS1 ORF 2727 51.64 0 3070990..3071661 - 223 74313345 ygcF SSON_2930 - hypothetical protein 2728 46.20 -1 3071962..3072264 + 100 74313346 - SSON_2931 - IS600 ORF1 2729 51.96 0 3072405..3073118 + 237 74313347 - SSON_2932 - IS600 ORF2 2730 38.13 -2 3073221..3073970 + 249 74313348 ygcG SSON_2933 - hypothetical protein 2731 54.37 0 3073981..3074484 - 167 74313349 - SSON_2934 - IS1 ORF 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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