IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2632	 52.27	0	2968250..2969242	+	330	74313250	proX	SSON_2824	-	glycine betaine transporter periplasmic subunit
2633	 54.77	0	2969533..2970717	+	394	74313251	-	SSON_2825	-	permease
2634	 52.57	0	2970841..2971578	+	245	74313252	-	SSON_2826	-	hypothetical protein
2635	 55.36	0	2971568..2971903	+	111	74313253	ygaH	SSON_2827	-	hypothetical protein
2636	 49.15	0	2971994..2972524	+	176	74313254	emrR	SSON_2828	-	transcriptional repressor MprA
2637	 53.11	0	2972651..2973823	+	390	74313255	emrA	SSON_2829	-	multidrug resistance secretion protein
2638	 56.47	+1	2973840..2975378	+	512	74313256	emrB	SSON_2830	-	membrane translocase
2639	 51.55	0	2975442..2975957	-	171	74313257	ygaG	SSON_2831	-	S-ribosylhomocysteinase
2640	 51.25	0	2976107..2977663	-	518	74313258	gshA	SSON_2832	-	glutamate--cysteine ligase
2641	 49.18	0	2977736..2978164	-	142	74313259	-	SSON_2833	-	hypothetical protein
2642	 53.44	0	2978161..2978727	-	188	74313260	yqaB	SSON_2834	-	fructose-1-phosphatase
2643	 49.46	0	2980051..2980236	-	61	74313261	csrA	SSON_2840	-	carbon storage regulator
2644	 53.67	0	2980471..2983101	-	876	74313262	alaS	SSON_2841	-	alanyl-tRNA synthetase
2645	 50.70	0	2983229..2983729	-	166	74313263	recX	SSON_2842	-	recombination regulator RecX
2646	 53.86	0	2983957..2985018	-	353	74313264	recA	SSON_2843	-	recombinase A
2647	 56.63	+1	2985098..2985595	-	165