IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2622	 48.15	0	2957756..2958160	-	134	74313240	stpA	SSON_2813	-	DNA binding protein, nucleoid-associated
2623	 57.73	+1	2958675..2959871	+	398	74313241	-	SSON_2814	-	ISSfl2 ORF
2624	 48.67	0	2960280..2960729	+	149	74313242	-	SSON_2815	-	hypothetical protein
2625	 46.09	-1	2960766..2961110	-	114	74313243	ygaC	SSON_2816	-	hypothetical protein
2626	 53.51	0	2961250..2961591	+	113	74313244	ygaM	SSON_2817	-	hypothetical protein
2627	 53.25	0	2961839..2962084	+	81	74313245	nrdH	SSON_2818	-	glutaredoxin-like protein
2628	 52.35	0	2962464..2964608	+	714	74313246	nrdE	SSON_2820	-	ribonucleotide-diphosphate reductase subunit alpha
2629	 48.12	0	2964618..2965577	+	319	74313247	nrdF	SSON_2821	-	ribonucleotide-diphosphate reductase subunit beta
2630	 48.79	0	2965933..2967135	+	400	74313248	proV	SSON_2822	-	glycine betaine transporter ATP-binding subunit
2631	 58.12	+1	2967128..2968192	+	354	74313249	proW	SSON_2823	-	glycine betaine transporter membrane protein
2632	 52.27	0	2968250..2969242	+	330	74313250	proX	SSON_2824	-	glycine betaine transporter periplasmic subunit
2633	 54.77	0	2969533..2970717	+	394	74313251	-	SSON_2825	-	permease
2634	 52.57	0	2970841..2971578	+	245	74313252	-	SSON_2826	-	hypothetical protein
2635	 55.36	0	2971568..2971903	+	111	74313253	ygaH	SSON_2827	-	hypothetical protein
2636	 49.15	0	2971994..2972524	+	176	74313254	emrR	SSON_2828	-	transcriptional repressor MprA
2637	 53.11	0	2972651..2973823	+	390