IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2575	 52.63	0	2914038..2914835	+	265	74313193	-	SSON_2760	-	IS21 ORF2
2576	 49.33	0	2914897..2915946	+	349	74313194	yfiN	SSON_2761	-	hypothetical protein
2577	 50.72	0	2915962..2916444	+	160	74313195	yfiB	SSON_2762	-	putative outer membrane lipoprotein
2578	 47.99	0	2916521..2916868	-	115	74313196	rplS	SSON_2763	-	50S ribosomal protein L19
2579	 53.26	0	2916910..2917677	-	255	74313197	trmD	SSON_2764	-	tRNA (guanine-N(1)-)-methyltransferase
2580	 49.00	0	2917708..2918256	-	182	161986471	rimM	SSON_2765	-	16S rRNA-processing protein
2581	 51.41	0	2918275..2918523	-	82	74313199	rpsP	SSON_2766	-	30S ribosomal protein S16
2582	 54.48	0	2918772..2920133	-	453	74313200	ffh	SSON_2767	-	signal recognition particle protein
2583	 52.25	0	2920225..2921091	+	288	74313201	-	SSON_2768	-	hypothetical protein
2584	 51.63	0	2921202..2922398	+	398	161986470	yfjD	SSON_2769	-	hypothetical protein
2585	 50.17	0	2922453..2923046	-	197	74313203	grpE	SSON_2770	-	heat shock protein GrpE
2586	 49.94	0	2923169..2924047	+	292	74313204	ppnK	SSON_2771	-	inorganic polyphosphate/ATP-NAD kinase
2587	 51.74	0	2924133..2925794	+	553	74313205	recN	SSON_2772	-	recombination and repair protein
2588	 49.71	0	2925943..2926284	+	113	161986469	smpA	SSON_2773	-	hypothetical protein
2589	 49.07	0	2926343..2926666	-	107	74313207	-	SSON_2774	-	IS4 orf
2590	 55.19	0	2927053..2927958	+	301