IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2562	 36.71	-2	2904817..2905023	+	68	74313180	-	SSON_2747	-	hypothetical protein
2563	 45.91	-1	2905058..2905399	+	113	74313181	yfiA	SSON_2748	-	translation inhibitor protein RaiA
2564	 39.58	-2	2905503..2905550	+	15	74313182	pheL	SSON_2749	-	leader peptide of chorismate mutase-P-prephenate dehydratase
2565	 48.75	0	2905650..2906810	+	386	74313183	pheA	SSON_2750	-	bifunctional chorismate mutase/prephenate dehydratase
2566	 52.14	0	2906853..2907974	-	373	74313184	tyrA	SSON_2751	-	bifunctional chorismate mutase/prephenate dehydrogenase
2567	 51.73	0	2907985..2909055	-	356	74313185	aroF	SSON_2752	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2568	 47.09	-1	2909264..2909641	+	125	74313186	yfiL	SSON_2753	-	hypothetical protein
2569	 54.37	0	2909869..2910372	+	167	74313187	-	SSON_2754	-	IS1 ORF
2570	 45.66	-1	2910556..2911074	+	172	74313188	-	SSON_2755	-	hypothetical protein
2571	 52.10	0	2911174..2911887	-	237	74313189	-	SSON_2756	-	IS600 ORF2
2572	 46.20	-1	2912028..2912330	-	100	74313190	-	SSON_2757	-	IS600 ORF1
2573	 50.00	0	2912382..2912585	-	67	74313191	-	SSON_2758	-	IS600 ORF1
2574	 53.03	0	2912866..2914038	+	390	74313192	-	SSON_2759	-	IS21 ORF1
2575	 52.63	0	2914038..2914835	+	265	74313193	-	SSON_2760	-	IS21 ORF2
2576	 49.33	0	2914897..2915946	+	349	74313194	yfiN	SSON_2761	-	hypothetical protein
2577	 50.72	0	2915962..2916444	+	160