IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2443	 51.52	0	2768627..2769907	+	426	161986476	csiE	SSON_2617	-	stationary phase inducible protein CsiE
2444	 56.40	+1	2769899..2771038	-	379	74313062	hcaT	SSON_2618	-	putative 3-phenylpropionic acid transporter
2445	 52.72	0	2772224..2773585	+	453	74313063	hcaA1	SSON_2620	-	large terminal subunit of phenylpropionate dioxygenase
2446	 51.83	0	2773582..2774100	+	172	74313064	hcaA2	SSON_2621	-	3-phenylpropionate dioxygenase subunit beta
2447	 55.76	0	2774100..2774420	+	106	74313065	hcaC	SSON_2622	-	3-phenylpropionate dioxygenase ferredoxin subunit
2448	 56.21	+1	2774417..2775229	+	270	74313066	hcaB	SSON_2623	-	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase
2449	 54.03	0	2775239..2776441	+	400	74313067	hcaD	SSON_2624	-	phenylpropionate dioxygenase ferredoxin reductase subunit
2450	 54.37	0	2776812..2777315	+	167	74313068	-	SSON_2625	-	IS1 ORF
2451	 54.98	0	2777794..2778666	-	290	74313069	yphB	SSON_2627	-	hypothetical protein
2452	 54.61	0	2778678..2779772	-	364	74313070	yphC	SSON_2628	-	putative oxidoreductase
2453	 55.66	0	2779805..2780803	-	332	74313071	yphD	SSON_2629	-	putative transport system permease protein
2454	 55.49	0	2780828..2782339	-	503	74313072	yphE	SSON_2630	-	putative ATP-binding component of a transport system
2455	 45.53	-1	2782362..2783345	-	327	74313073	yphF	SSON_2631	-	putative LACI-type transcriptional regulator
2456	 53.51	0	2788228..2789481	-	417	74313074	glyA	SSON_2634	-	serine hydroxymethyltransferase
2457	 52.56	0	2789809..2790999	+	396