IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1879	 52.46	0	2109130..2109312	-	60	74312496	-	SSON_2014	-	hypothetical protein
1880	 53.27	0	2109391..2110308	-	305	74312497	yedI	SSON_2015	-	hypothetical protein
1881	 55.63	0	2111391..2111861	-	156	74312498	vsr	SSON_2017	-	DNA mismatch endonuclease
1882	 51.94	0	2111842..2113260	-	472	74312499	dcm	SSON_2018	-	DNA cytosine methylase
1883	 54.19	0	2113327..2113983	-	218	74312500	yedJ	SSON_2019	-	hypothetical protein
1884	 49.48	0	2114023..2114406	-	127	74312501	-	SSON_2020	-	hypothetical protein
1885	 54.37	0	2116005..2116508	+	167	74312502	-	SSON_2022	-	IS1 ORF
1886	 48.83	0	2117486..2118337	+	283	74312503	yedU	SSON_2023	-	chaperone protein HchA
1887	 53.41	0	2118353..2118631	+	92	74312504	-	SSON_2024	-	IS2 orf1
1888	 55.19	0	2118589..2119494	+	301	161986516	-	SSON_2025	-	insertion element IS2 transposase InsD
1889	 39.51	-2	2119522..2120880	-	452	74312506	yedV	SSON_2026	-	putative 2-component sensor protein
1890	 44.20	-1	2120880..2121551	-	223	161986515	yedW	SSON_2027	-	transcriptional regulatory protein YedW
1891	 55.08	0	2122002..2122907	+	301	161986514	-	SSON_2028	-	insertion element IS2 transposase InsD
1892	 42.03	-2	2123020..2123433	+	137	74312509	yedX	SSON_2029	-	hypothetical protein
1893	 52.34	0	2123542..2124546	+	334	74312510	-	SSON_2030	-	putative sulfite oxidase subunit YedY
1894	 48.27	0	2124547..2125182	+	211