IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1328	 49.29	0	1496064..1496414	+	116	74311945	celC	SSON_1422	-	N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA
1329	 41.64	-2	1496422..1497264	+	280	74311946	celD	SSON_1423	-	DNA-binding transcriptional regulator ChbR
1330	 46.78	-1	1497369..1498721	+	450	74311947	celF	SSON_1424	-	cryptic phospho-beta-glucosidase
1331	 50.59	0	1498734..1499492	+	252	74311948	ydjC	SSON_1425	-	hypothetical protein
1332	 51.50	0	1499750..1502011	-	753	74311949	katE	SSON_1426	-	hydroperoxidase II
1333	 51.52	0	1502194..1502457	+	87	74311950	-	SSON_1427	-	cell division modulator
1334	 52.59	0	1503554..1504945	-	463	74311951	-	SSON_1428	-	kinase fragment
1335	 51.27	0	1505078..1505668	-	196	161986533	-	SSON_1429	-	hypothetical protein
1336	 51.72	0	1505831..1506499	-	222	74311953	yniC	SSON_1430	-	2-deoxyglucose-6-phosphatase
1337	 44.13	-1	1506646..1507182	+	178	74311954	-	SSON_1431	-	hypothetical protein
1338	 51.80	0	1507223..1508083	-	286	74311955	-	SSON_1432	-	hypothetical protein
1339	 43.64	-1	1508189..1508479	-	96	74311956	-	SSON_1433	-	hypothetical protein
1340	 53.98	0	1508580..1509509	-	309	74311957	pfkB	SSON_1434	-	6-phosphofructokinase 2
1341	 49.41	0	1509796..1510554	+	252	74311958	-	SSON_1435	-	hypothetical protein
1342	 47.95	0	1510607..1510825	-	72	74311959	-	SSON_1436	-	hypothetical protein
1343	 54.17	0	1512504..1513007	+	167