IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1113	 46.20	-1	1271022..1271324	-	100	74311729	-	SSON_1192	-	IS600 ORF1
1114	 42.86	-2	1271890..1273464	+	524	74311730	fliC	SSON_1193	-	flagellar filament structural protein
1115	 54.44	0	1273629..1274348	+	239	74311731	fliA	SSON_1194	-	flagellar biosynthesis sigma factor
1116	 54.56	0	1274968..1275471	+	167	74311732	-	SSON_1196	-	IS1 ORF
1117	 49.69	0	1275810..1276610	+	266	74311733	fliY	SSON_1197	-	cystine transporter subunit
1118	 52.91	0	1276664..1277695	-	343	74311734	-	SSON_1198	-	IS630 orf
1119	 53.80	0	1277870..1278856	+	328	74311735	yedO	SSON_1199	-	D-cysteine desulfhydrase
1120	 53.06	0	1278871..1279539	+	222	74311736	yecS	SSON_1200	-	putative transport system permease protein (former yecC)
1121	 54.32	0	1279536..1280288	+	250	74311737	yecC	SSON_1201	-	putative amino-acid ABC transporter ATP-binding protein YecC
1122	 46.20	-1	1280518..1281240	+	240	74311738	sdiA	SSON_1202	-	DNA-binding transcriptional activator SdiA
1123	 47.56	0	1281307..1281531	-	74	74311739	yecF	SSON_1203	-	hypothetical protein
1124	 49.62	0	1281990..1282646	+	218	74311740	uvrY	SSON_1204	-	response regulator
1125	 51.83	0	1282643..1284475	+	610	161986542	uvrC	SSON_1205	-	excinuclease ABC subunit C
1126	 52.28	0	1284532..1285080	+	182	74311742	pgsA	SSON_1206	-	phosphatidylglycerophosphate synthetase
1127	 53.00	0	1285730..1286395	+	221	74311743	yecA	SSON_1210	-	hypothetical protein
1128	 51.07	0	1286457..1287668	-	403