IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
554	 47.50	0	682132..682851	-	239	157960384	-	Spea_0555	-	short-chain dehydrogenase/reductase SDR
555	 45.14	0	682998..683912	+	304	157960385	-	Spea_0556	-	LysR family transcriptional regulator
556	 46.90	0	684117..685310	+	397	157960386	-	Spea_0557	-	putative plasmid transfer protein
557	 47.27	0	685317..686048	-	243	157960387	-	Spea_0558	-	hypothetical protein
558	 44.13	0	686241..686555	-	104	157960388	-	Spea_0559	-	transcriptional repressor protein MetJ
559	 49.27	+1	686767..687927	+	386	157960389	-	Spea_0560	-	O-succinylhomoserine (thiol)-lyase
560	 48.87	+1	687943..690336	+	797	157960390	-	Spea_0561	-	bifunctional aspartate kinase II/homoserine dehydrogenase II
561	 48.04	0	690542..691432	+	296	157960391	-	Spea_0562	-	5,10-methylenetetrahydrofolate reductase
562	 40.42	-1	691591..691971	+	126	157960392	-	Spea_0563	-	hypothetical protein
563	 45.61	0	692027..692311	+	94	157960393	-	Spea_0564	-	hypothetical protein
564	 42.64	0	692368..693345	+	325	157960394<