version 1.0
Shewanella pealeana ATCC 700345, complete genome - 1..5174581 4241 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 435 44.19 0 542356..542751 + 131 157960265 - Spea_0436 - putative thiol-disulphide oxidoreductase DCC 436 48.45 0 543585..544166 + 193 157960266 - Spea_0437 - molybdopterin oxidoreductase Fe4S4 region 437 47.34 0 544215..546605 + 796 157960267 - Spea_0438 - formate dehydrogenase, alpha subunit 438 49.50 +1 546608..547510 + 300 157960268 - Spea_0439 - formate dehydrogenase, beta subunit 439 47.60 0 547516..548160 + 214 157960269 - Spea_0440 - formate dehydrogenase, gamma subunit 440 51.34 +1 548163..549134 + 323 157960270 - Spea_0441 - formate dehydrogenase accessory protein FdhE 441 50.10 +1 549258..550748 + 496 157960271 - Spea_0442 - selenocysteine synthase 442 48.48 +1 550745..552652 + 635 157960272 - Spea_0443 - selenocysteine-specific translation elongation factor 443 40.16 -1 553011..553874 + 287 157960273 - Spea_0444 - formate dehydrogenase family accessory protein FdhD 444 48.51 +1 553920..555191 + 423 157960274 - Spea_0445 - putative inner membrane protein 445 44.73 0 555278..555514 + 78 157960275 - Spea_0446 - hypothetical protein 446 46.23 0 555907..556635 - 242 157960276 - Spea_0447 - hypothetical protein 447 46.36 0 556787..557707 - 306 157960277 - Spea_0448 - LysR family transcriptional regulator 448 45.08 0 557869..558234 + 121 157960278 - Spea_0449 - hypothetical protein 449 48.16 0 558677..560740 + 687 157960279 - Spea_0450 - hypothetical protein 450 45.10 0 561005..561463 + 152 157960280 - Spea_0451 - GCN5-related N-acetyltransferase 451 43.09 0 561549..561794 - 81 157960281 - Spea_0452 - hypothetical protein 452 47.68 0 561972..562856 + 294 157960282 - Spea_0453 - radical SAM domain-containing protein 453 47.18 0 562872..563810 - 312 157960283 - Spea_0454 - LysR family transcriptional regulator 454 45.66 0 563807..564739 - 310 157960284 - Spea_0455 - LysR family transcriptional regulator 455 45.92 0 565038..566078 - 346 157960285 - Spea_0456 - OmpA domain-containing protein 456 43.37 0 566318..567154 - 278 157960286 - Spea_0457 - MscS mechanosensitive ion channel 457 41.83 -1 567367..567825 + 152 157960287 - Spea_0458 - hypothetical protein 458 39.35 -1 567896..568111 - 71 157960288 - Spea_0459 - hypothetical protein 459 49.01 +1 568608..569366 + 252 157960289 - Spea_0460 - uridine phosphorylase 460 42.90 0 569440..570192 - 250 157960290 - Spea_0461 - hypothetical protein 461 45.83 0 570582..571061 + 159 157960291 - Spea_0462 - hypothetical protein 462 48.49 +1 571090..572019 + 309 157960292 - Spea_0463 - band 7 protein 463 47.82 0 572019..572957 + 312 157960293 - Spea_0464 - band 7 protein 464 45.41 0 573068..573481 + 137 157960294 - Spea_0465 - NUDIX hydrolase 465 45.29 0 573816..575906 - 696 157960295 - Spea_0466 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 466 46.05 0 576330..576683 + 117 157960296 - Spea_0467 - endoribonuclease L-PSP 467 49.40 +1 576841..579006 + 721 157960297 - Spea_0468 - DNA-dependent helicase II 468 47.40 0 579168..580034 + 288 157960298 - Spea_0469 - 4-hydroxybenzoate octaprenyltransferase 469 46.14 0 580298..580828 + 176 157960299 - Spea_0470 - hypothetical protein 470 44.31 0 580895..581914 - 339 157960300 - Spea_0471 - putative esterase 471 42.28 0 582132..583238 + 368 157960301 - Spea_0472 - hypothetical protein 472 48.01 0 583314..583892 - 192 157960302 - Spea_0473 - hypothetical protein 473 43.52 0 584044..584259 - 71 157960303 - Spea_0474 - hypothetical protein 474 48.04 0 584666..586195 + 509 157960304 - Spea_0475 - Na+/H+ antiporter NhaC 475 47.57 0 586492..587025 - 177 157960305 - Spea_0476 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 476 46.98 0 587069..587515 - 148 157960306 - Spea_0477 - cytochrome C biogenesis protein 477 47.76 0 587512..589494 - 660 157960307 - Spea_0478 - cytochrome c-type biogenesis protein CcmF 478 45.66 0 590051..592087 + 678 157960308 - Spea_0479 - cytochrome c, putative 479 43.36 0 592148..592576 + 142 157960309 - Spea_0480 - rhodanese domain-containing protein 480 46.39 0 592614..593417 + 267 157960310 - Spea_0481 - peptidylprolyl isomerase FKBP-type 481 40.38 -1 593449..594186 + 245 157960311 - Spea_0482 - hypothetical protein 482 47.74 0 594264..594971 + 235 157960312 - Spea_0483 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 483 45.89 0 594974..595921 + 315 157960313 - Spea_0484 - polysulphide reductase NrfD 484 48.67 +1 596272..596760 + 162 157960314 - Spea_0485 - NosL family protein 485 49.22 +1 596830..598170 + 446 157960315 - Spea_0486 - periplasmic copper-binding 486 49.39 +1 598170..599147 + 325 157960316 - Spea_0487 - ABC transporter related 487 45.63 0 599149..599994 + 281 157960317 - Spea_0488 - copper ABC transporter, permease protein 488 43.61 0 600202..601485 + 427 157960318 - Spea_0489 - transcriptional regulator, CadC 489 37.25 -2 602626..603084 - 152 157960319 - Spea_0490 - hypothetical protein 490 36.99 -2 603137..603382 - 81 157960320 - Spea_0491 - hypothetical protein 491 48.04 0 603830..604135 + 101 157960321 - Spea_0492 - hypothetical protein 492 35.00 -2 604262..604921 - 219 157960322 - Spea_0493 - lysine exporter protein LysE/YggA 493 44.93 0 605426..605563 + 45 157960323 - Spea_0494 - hypothetical protein 494 40.35 -1 605743..605913 + 56 157960324 - Spea_0495 - hypothetical protein 495 38.71 -1 606457..607014 + 185 157960325 - Spea_0496 - hypothetical protein 496 41.87 -1 607120..608490 + 456 157960326 - Spea_0497 - FNIP 497 48.87 +1 608893..611712 + 939 157960327 - Spea_0498 - hypothetical protein 498 44.28 0 612325..613329 + 334 157960328 - Spea_0499 - hypothetical protein 499 47.27 0 614099..614428 + 109 157960329 - Spea_0500 - ferredoxin 500 42.17 0 614605..615147 + 180 157960330 - Spea_0501 - RNA polymerase sigma factor SigZ 501 41.46 -1 615214..615927 + 237 157960331 - Spea_0502 - glutathione S-transferase domain-containing protein 502 44.95 0 616645..618675 + 676 157960332 - Spea_0503 - cytochrome c, putative 503 45.75 0 618715..619173 + 152 157960333 - Spea_0504 - rhodanese domain-containing protein 504 44.66 0 619233..620018 + 261 157960334 - Spea_0505 - peptidylprolyl isomerase FKBP-type 505 41.04 -1 620104..620817 + 237 157960335 - Spea_0506 - TPR repeat-containing protein 506 46.13 0 620880..621590 + 236 157960336 - Spea_0507 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 507 44.62 0 621593..622540 + 315 157960337 - Spea_0508 - polysulphide reductase NrfD 508 49.28 +1 622713..623201 + 162 157960338 - Spea_0509 - NosL family protein 509 46.59 0 623257..624576 + 439 157960339 - Spea_0510 - periplasmic copper-binding 510 47.63 0 624672..625580 + 302 157960340 - Spea_0511 - ABC transporter related 511 42.30 0 625582..626406 + 274 157960341 - Spea_0512 - ABC-2 type transporter 512 43.15 0 626672..627955 + 427 157960342 - Spea_0513 - transcriptional regulator, CadC 513 48.57 +1 628444..628863 + 139 157960343 - Spea_0514 - D-ribose pyranase 514 49.60 +1 628882..630387 + 501 157960344 - Spea_0515 - D-ribose transporter ATP binding protein 515 50.15 +1 630384..631358 + 324 157960345 - Spea_0516 - ribose ABC transporter permease protein 516 49.67 +1 631445..632344 + 299 157960346 - Spea_0517 - D-ribose transporter subunit RbsB 517 48.05 0 632466..633389 + 307 157960347 - Spea_0518 - ribokinase 518 50.85 +1 633517..634521 + 334 157960348 - Spea_0519 - LacI family transcription regulator 519 45.99 0 634615..635325 - 236 157960349 - Spea_0520 - FMN reductase 520 49.66 +1 635435..636916 - 493 157960350 - Spea_0521 - UbiD family decarboxylase 521 48.25 0 637137..637706 + 189 157960351 - Spea_0522 - hypothetical protein 522 42.13 0 637794..638384 + 196 157960352 - Spea_0523 - hypothetical protein 523 42.86 0 638457..638981 - 174 157960353 - Spea_0524 - GCN5-related N-acetyltransferase 524 44.50 0 639013..639576 - 187 157960354 - Spea_0525 - redoxin domain-containing protein 525 47.05 0 640018..641220 + 400 157960355 - Spea_0526 - aromatic amino acid transporter 526 48.81 +1 643519..644862 + 447 157960356 - Spea_0527 - glutamate dehydrogenase 527 40.64 -1 651937..653757 + 606 157960357 - Spea_0528 - hypothetical protein 528 46.12 0 653848..655044 - 398 157960358 - Spea_0529 - putative plasmid transfer protein 529 44.34 0 655536..656162 + 208 157960359 - Spea_0530 - hypothetical protein 530 42.66 0 656197..656550 - 117 157960360 - Spea_0531 - hypothetical protein 531 50.38 +1 656680..657342 - 220 157960361 - Spea_0532 - short-chain dehydrogenase/reductase SDR 532 49.23 +1 657397..657849 - 150 157960362 - Spea_0533 - acetyl-CoA carboxylase, biotin carboxyl carrier protein 533 48.99 +1 657864..658310 - 148 157960363 - Spea_0534 - 3-dehydroquinate dehydratase, type II 534 48.94 +1 658483..658905 - 140 157960364 - Spea_0535 - hypothetical protein 45.18 MEAN 3.28 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0