IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
435	 44.19	0	542356..542751	+	131	157960265	-	Spea_0436	-	putative thiol-disulphide oxidoreductase DCC
436	 48.45	0	543585..544166	+	193	157960266	-	Spea_0437	-	molybdopterin oxidoreductase Fe4S4 region
437	 47.34	0	544215..546605	+	796	157960267	-	Spea_0438	-	formate dehydrogenase, alpha subunit
438	 49.50	+1	546608..547510	+	300	157960268	-	Spea_0439	-	formate dehydrogenase, beta subunit
439	 47.60	0	547516..548160	+	214	157960269	-	Spea_0440	-	formate dehydrogenase, gamma subunit
440	 51.34	+1	548163..549134	+	323	157960270	-	Spea_0441	-	formate dehydrogenase accessory protein FdhE
441	 50.10	+1	549258..550748	+	496	157960271	-	Spea_0442	-	selenocysteine synthase
442	 48.48	+1	550745..552652	+	635	157960272	-	Spea_0443	-	selenocysteine-specific translation elongation factor
443	 40.16	-1	553011..553874	+	287	157960273	-	Spea_0444	-	formate dehydrogenase family accessory protein FdhD
444	 48.51	+1	553920..555191	+	423	157960274	-	Spea_0445	-	putative inner membrane protein
445	 44.73	0	555278..555514	+	78