IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3946	 45.33	0	4819335..4820276	-	313	157963776	-	Spea_3965	-	polysulphide reductase NrfD
3947	 45.76	0	4820273..4820956	-	227	157963777	-	Spea_3966	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
3948	 42.25	0	4820971..4821441	-	156	157963778	-	Spea_3967	-	formate-dependent nitrite reductase
3949	 36.18	-2	4821524..4822015	-	163	157963779	-	Spea_3968	-	hypothetical protein
3950	 36.44	-2	4822559..4823524	+	321	157963780	-	Spea_3969	-	LysR family transcriptional regulator
3951	 39.31	-1	4823602..4824555	-	317	157963781	-	Spea_3970	-	LysR family transcriptional regulator
3952	 49.25	+1	4824773..4826500	+	575	157963782	-	Spea_3971	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
3953	 48.85	+1	4826500..4827285	+	261	157963783	-	Spea_3972	-	alpha/beta hydrolase fold
3954	 48.88	+1	4827341..4828414	+	357	157963784	-	Spea_3973	-	O-succinylbenzoate synthase
3955	 51.20	+1	4828495..4829949	+	484	157963785	-	Spea_3974	-	O-succinylbenzoate-CoA ligase
3956	 41.84	-1	4830318..4830599	-	93