IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3750	 47.46	0	4581935..4583605	-	556	157963580	-	Spea_3768	-	pilus (MSHA type) biogenesis protein MshL
3751	 40.71	-1	4583607..4583945	-	112	157963581	-	Spea_3769	-	hypothetical protein
3752	 41.86	-1	4583926..4584582	-	218	157963582	-	Spea_3770	-	MSHA biogenesis protein MshJ
3753	 44.66	0	4584579..4585187	-	202	157963583	-	Spea_3771	-	fimbrial assembly family protein
3754	 43.54	0	4585184..4586065	-	293	157963584	-	Spea_3772	-	biogenesis protein MshI
3755	 45.34	0	4586457..4588364	-	635	157963585	-	Spea_3773	-	regulatory protein CsrD
3756	 45.96	0	4588590..4589840	-	416	157963586	-	Spea_3774	-	malate dehydrogenase
3757	 42.89	0	4590045..4590818	-	257	157963587	-	Spea_3775	-	nuclease
3758	 42.25	0	4591015..4591227	-	70	157963588	-	Spea_3776	-	50S ribosomal protein L31
3759	 46.23	0	4591447..4592175	-	242	157963589	-	Spea_3777	-	hypothetical protein
3760	 50.32	+1	4592443..4594638	+	731	157963590	-	Spea_3778	-	primosomal protein N'
3761	 46.33	0	459