IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1265	 40.61	-1	1539298..1540548	+	416	157961095	-	Spea_1267	-	hypothetical protein
1266	 42.49	0	1540535..1542358	+	607	157961096	-	Spea_1268	-	hypothetical protein
1267	 41.22	-1	1542400..1545645	+	1081	157961097	-	Spea_1269	-	helicase domain-containing protein
1268	 42.42	0	1546309..1547529	+	406	157961098	-	Spea_1270	-	DNA-cytosine methyltransferase
1269	 45.73	0	1547568..1551101	+	1177	157961099	-	Spea_1271	-	helicase domain-containing protein
1270	 44.63	0	1551112..1555173	+	1353	157961100	-	Spea_1272	-	hypothetical protein
1271	 47.13	0	1555239..1558805	+	1188	157961101	-	Spea_1273	-	helicase domain-containing protein
1272	 45.45	0	1558802..1560625	+	607	157961102	-	Spea_1274	-	hypothetical protein
1273	 45.00	0	1560622..1561461	+	279	157961103	-	Spea_1275	-	hypothetical protein
1274	 39.13	-1	1561552..1562637	+	361	157961104	-	Spea_1276	-	hypothetical protein
1275	 36.87	-2	1562630..1563025	+	131	157961105	-	Spea_1277	-	hypothetical protein