IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1255	 50.29	+1	1529279..1529620	-	113	157961085	-	Spea_1257	-	hypothetical protein
1256	 46.01	0	1529734..1530096	-	120	157961086	-	Spea_1258	-	hypothetical protein
1257	 45.07	0	1530156..1530632	-	158	157961087	-	Spea_1259	-	DNA repair protein RadC
1258	 40.69	-1	1530827..1531030	+	67	157961088	-	Spea_1260	-	phage transcriptional regulator, AlpA
1259	 45.21	0	1531543..1531761	-	72	157961089	-	Spea_1261	-	hypothetical protein
1260	 39.93	-1	1532360..1533223	-	287	157961090	-	Spea_1262	-	hypothetical protein
1261	 42.88	0	1533379..1534656	+	425	157961091	-	Spea_1263	-	hypothetical protein
1262	 42.11	0	1534646..1535215	+	189	157961092	-	Spea_1264	-	hypothetical protein
1263	 41.10	-1	1535209..1538001	+	930	157961093	-	Spea_1265	-	hypothetical protein
1264	 45.39	0	1537998..1538876	+	292	157961094	-	Spea_1266	-	hypothetical protein
1265	 40.61	-1	1539298..1540548	+	416	157961095	-	Spea_1267	-	hypothetical protein
1266	 42.49	0	1540535..1542358	+	607