IslandPathversion 1.0

IslandPath Analysis: Shewanella frigidimarina NCIMB 400



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 42.09 STD DEV: 3.12
Shewanella frigidimarina NCIMB 400, complete genome - 1..4845257
4029 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1871	 40.34	0	2232644..2233285	+	213	114563059	-	Sfri_1888	-	transcriptional regulator, TetR family protein
1872	 43.70	0	2233297..2235573	+	758	114563060	-	Sfri_1889	-	acyl-CoA dehydrogenase
1873	 43.19	0	2235850..2237289	-	479	114563061	-	Sfri_1890	-	pyruvate kinase
1874	 42.81	0	2237719..2238573	-	284	114563062	-	Sfri_1891	-	DNA-binding transcriptional regulator HexR
1875	 42.65	0	2238911..2240380	+	489	114563063	-	Sfri_1892	-	glucose-6-phosphate 1-dehydrogenase
1876	 40.92	0	2240390..2241088	+	232	114563064	-	Sfri_1893	-	6-phosphogluconolactonase
1877	 45.32	+1	2241100..2242926	+	608	114563065	-	Sfri_1894	-	phosphogluconate dehydratase
1878	 45.12	0	2242948..2243592	+	214	114563066	-	Sfri_1895	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1879	 39.18	0	2243860..2244372	+	170	114563067	-	Sfri_1896	-	hypothetical protein
1880	 42.53	0	2244642..2245337	+	231	114563068	-	Sfri_1897	-	aspartate racemase
1881	 42.53	0	2245498..2248095	-	865	114563069	-	Sfri_1898	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
1882	 41.74	0	2248823..2249524	+	233	114563070	-	Sfri_1899	-	HAD family hydrolase
1883	 41.43	0	2249526..2250488	+	320	114563071	-	Sfri_1900	-	transcriptional regulator, DeoR family protein
1884	 40.59	0	2250689..2252425	+	578	114563072	-	Sfri_1901	-	putative nucleoside transport protein
1885	 39.53	0	2252400..2253593	-	397	114563073	-	Sfri_1902	-	transposase, IS4 family protein
1886	 39.58	0	2253894..2255414	+	506	114563074	-	Sfri_1903	-	mannitol dehydrogenase domain-containing protein
1887	 40.50	0	2255420..2256340	+	306	114563075	-	Sfri_1904	-	ribokinase-like domain-containing protein
1888	 42.77	0	2256483..2257859	-	458	114563076	-	Sfri_1905	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1889	 38.27	-1	2257869..2258456	-	195	114563077	-	Sfri_1906	-	hypothetical protein
1890	 41.56	0	2258569..2259783	-	404	114563078	-	Sfri_1907	-	aminotransferase AlaT
1891	 41.53	0	2260064..2260624	-	186	114563079	-	Sfri_1908	-	elongation factor P
1892	 38.97	-1	2260674..2261861	-	395	114563080	-	Sfri_1909	-	hypothetical protein
1893	 43.75	0	2261955..2262482	-	175	114563081	-	Sfri_1910	-	flavodoxin FldA
1894	 43.59	0	2262533..2262805	-	90	114563082	-	Sfri_1911	-	LexA regulated protein
1895	 39.64	0	2262814..2263035	-	73	114563083	-	Sfri_1912	-	hypothetical protein
1896	 43.28	0	2263134..2263907	-	257	114563084	-	Sfri_1913	-	alpha/beta hydrolase fold
1897	 40.35	0	2264213..2264839	+	208	114563085	-	Sfri_1914	-	replication initiation regulator SeqA
1898	 42.09	0	2264894..2266537	+	547	114563086	-	Sfri_1915	-	phosphoglucomutase
1899	 37.01	-1	2266708..2267115	+	135	114563087	-	Sfri_1916	-	hypothetical protein
1900	 44.47	0	2267196..2269412	-	738	114563088	-	Sfri_1917	-	catalase/peroxidase HPI
1901	 38.20	-1	2269609..2271171	-	520	114563089	-	Sfri_1918	-	diguanylate cyclase/phosphodiesterase
1902	 41.54	0	2271604..2273016	-	470	114563090	-	Sfri_1919	-	hypothetical protein
1903	 41.80	0	2273286..2274950	-	554	114563091	-	Sfri_1920	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
1904	 39.67	0	2275562..2276902	+	446	114563092	pssA	Sfri_1921	-	phosphatidylserine synthase
1905	 41.79	0	2276974..2277777	+	267	114563093	-	Sfri_1922	-	DTW domain-containing protein
1906	 39.17	0	2277928..2278287	+	119	114563094	-	Sfri_1923	-	hypothetical protein
1907	 40.60	0	2278417..2280426	+	669	114563095	-	Sfri_1924	-	ATP-dependent DNA helicase, RecQ family protein
1908	 42.03	0	2280423..2280698	+	91	114563096	-	Sfri_1925	-	hypothetical protein
1909	 40.74	0	2281014..2281580	-	188	114563097	-	Sfri_1926	-	ecotin precursor
1910	 37.63	-1	2281991..2283013	+	340	114563098	-	Sfri_1927	-	diguanylate cyclase
1911	 43.91	0	2283178..2285880	-	900	114563099	-	Sfri_1928	-	CoA-binding domain-containing protein
1912	 41.81	0	2286144..2289329	-	1061	114563100	-	Sfri_1929	-	acriflavin resistance protein
1913	 42.93	0	2289335..2290522	-	395	114563101	-	Sfri_1930	-	RND family efflux transporter MFP subunit
1914	 44.39	0	2290702..2291262	+	186	114563102	-	Sfri_1931	-	GCN5-related N-acetyltransferase
1915	 42.14	0	2291327..2292280	-	317	114563103	-	Sfri_1932	-	thioredoxin reductase
1916	 42.92	0	2292482..2292961	-	159	114563104	-	Sfri_1933	-	peptide methionine sulfoxide reductase
1917	 42.66	0	2293183..2294211	+	342	114563105	-	Sfri_1934	-	succinylglutamate desuccinylase
1918	 44.70	0	2294368..2295546	+	392	114563106	-	Sfri_1935	-	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring)
1919	 46.11	+1	2295550..2296527	+	325	114563107	-	Sfri_1936	-	transketolase, central region
1920	 44.67	0	2296537..2298159	+	540	114563108	-	Sfri_1937	-	dihydrolipoamide acetyltransferase
1921	 44.94	0	2298262..2299329	+	355	114563109	-	Sfri_1938	-	quinolinate synthetase
1922	 39.91	0	2299505..2301421	-	638	114563110	-	Sfri_1939	-	methyl-accepting chemotaxis sensory transducer
1923	 40.75	0	2302010..2303020	-	336	114563111	-	Sfri_1940	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1924	 38.99	0	2303251..2304081	-	276	114563112	-	Sfri_1941	-	hypothetical protein
1925	 40.71	0	2304282..2305718	+	478	114563113	-	Sfri_1942	-	glyceraldehyde-3-phosphate dehydrogenase
1926	 38.27	-1	2306879..2307364	-	161	114563114	-	Sfri_1943	-	transcriptional regulator, MarR family protein
1927	 42.80	0	2307490..2308197	-	235	114563115	-	Sfri_1944	-	hypothetical protein
1928	 37.93	-1	2308225..2309442	-	405	114563116	-	Sfri_1945	-	putative transporter, BCCT family protein
1929	 43.02	0	2309678..2311360	-	560	114563117	-	Sfri_1946	-	choline dehydrogenase
1930	 44.44	0	2311375..2312841	-	488	114563118	-	Sfri_1947	-	betaine aldehyde dehydrogenase
1931	 41.37	0	2312841..2313437	-	198	114563119	-	Sfri_1948	-	transcriptional regulator BetI
1932	 43.96	0	2314169..2314375	+	68	114563120	-	Sfri_1949	-	hypothetical protein
1933	 40.91	0	2315241..2315834	+	197	114563121	-	Sfri_1950	-	phage integrase family protein
1934	 47.37	+1	2315997..2317100	+	367	114563122	-	Sfri_1951	-	helix-turn-helix domain-containing protein
1935	 44.44	0	2317081..2317575	+	164	114563123	-	Sfri_1952	-	hypothetical protein
1936	 43.38	0	2317631..2319202	+	523	114563124	-	Sfri_1953	-	type I restriction-modification system, M subunit
1937	 41.52	0	2319199..2320419	+	406	114563125	-	Sfri_1954	-	restriction modification system DNA specificity subunit
1938	 47.80	+1	2320508..2321509	+	333	114563126	-	Sfri_1955	-	filamentation induced by cAMP protein Fic
1939	 44.06	0	2321573..2324686	+	1037	114563127	-	Sfri_1956	-	type I site-specific deoxyribonuclease, HsdR family protein
1940	 33.41	-2	2325190..2326515	+	441	114563128	-	Sfri_1957	-	hypothetical protein
1941	 43.57	0	2326702..2328771	-	689	114563129	-	Sfri_1958	-	endothelin-converting protein 1
1942	 44.00	0	2329255..2329854	-	199	114563130	-	Sfri_1959	-	hypothetical protein
1943	 42.48	0	2329859..2330842	-	327	114563131	-	Sfri_1960	-	hypothetical protein
1944	 46.14	+1	2330839..2331603	-	254	114563132	-	Sfri_1961	-	ABC transporter related
1945	 46.00	+1	2331606..2332718	-	370	114563133	-	Sfri_1962	-	hypothetical protein
1946	 45.41	+1	2333041..2333454	+	137	114563134	-	Sfri_1963	-	putative prophage repressor
1947	 43.99	0	2333461..2334717	+	418	114563135	-	Sfri_1964	-	DNA-directed DNA polymerase
1948	 39.95	0	2334858..2335235	+	125	114563136	-	Sfri_1965	-	hypothetical protein
1949	 35.40	-2	2335339..2335773	+	144	114563137	-	Sfri_1966	-	hypothetical protein
1950	 36.81	-1	2335886..2336317	+	143	114563138	-	Sfri_1967	-	hypothetical protein
1951	 43.60	0	2336453..2336968	+	171	114563139	-	Sfri_1968	-	hypothetical protein
1952	 45.85	+1	2336965..2338938	+	657	114563140	-	Sfri_1969	-	copper-resistance protein, CopA family protein
1953	 44.12	0	2338950..2339663	+	237	114563141	-	Sfri_1970	-	copper resistance B precursor
1954	 46.10	+1	2339779..2340201	+	140	114563142	-	Sfri_1971	-	copper resistance protein CopC
1955	 40.93	0	2340216..2341136	+	306	114563143	-	Sfri_1972	-	copper resistance D domain-containing protein
1956	 42.57	0	2341212..2341655	+	147	114563144	-	Sfri_1973	-	putative orphan protein
1957	 40.18	0	2342040..2342258	+	72	114563145	-	Sfri_1974	-	putative DNA-binding protein
1958	 42.26	0	2342255..2342803	+	182	114563146	-	Sfri_1975	-	hypothetical protein
1959	 41.84	0	2342841..2344157	-	438	114563147	-	Sfri_1976	-	sigma54 specific transcriptional regulator, Fis family protein
1960	 43.57	0	2344469..2345113	+	214	114563148	-	Sfri_1977	-	hypothetical protein
1961	 40.83	0	2345391..2346257	+	288	114563149	-	Sfri_1978	-	beta-lactamase domain-containing protein
1962	 42.96	0	2346376..2346780	-	134	114563150	-	Sfri_1979	-	rhodanese domain-containing protein
1963	 42.23	0	2346796..2347548	-	250	114563151	-	Sfri_1980	-	hypothetical protein
1964	 41.95	0	2347563..2348432	-	289	114563152	-	Sfri_1981	-	beta-lactamase domain-containing protein
1965	 43.93	0	2348489..2349130	-	213	114563153	-	Sfri_1982	-	peroxidase
1966	 43.00	0	2349635..2350555	+	306	114563154	-	Sfri_1983	-	transcriptional regulator, LysR family protein
1967	 44.44	0	2350740..2351702	-	320	114563155	-	Sfri_1984	-	radical SAM domain-containing protein
1968	 42.57	0	2351695..2353263	-	522	114563156	-	Sfri_1985	-	hypothetical protein
1969	 35.17	-2	2353623..2354546	-	307	114563157	-	Sfri_1986	-	diguanylate cyclase
1970	 37.05	-1	2354543..2355349	-	268	114563158	-	Sfri_1987	-	alpha/beta hydrolase fold
42.09	MEAN

3.12	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.