IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
856	 52.91	0	930482..930670	+	62	30062429	-	S0950	-	hypothetical protein
857	 52.54	0	931204..931479	+	91	30062430	-	S0952	-	IS1 orfA
858	 52.78	0	931398..931901	+	167	30062431	-	S0953	-	IS1 orfB
859	 46.53	-1	933145..933447	+	100	30062432	-	S0956	-	IS600 orfA
860	 52.24	0	933588..934301	+	237	30062433	-	S0957	-	IS600 orfB
861	 52.78	0	934544..935047	-	167	30062434	-	S0958	-	IS1 orfB
862	 52.38	0	935162..935875	-	237	30062435	-	S0959	-	IS600 orfB
863	 46.20	-1	936016..936318	-	100	30062436	-	S0960	-	IS600 orfA
864	 49.53	0	936727..937467	-	246	30062437	pflA	S0961	-	pyruvate formate lyase-activating enzyme 1
865	 51.07	0	937659..939941	-	760	30062438	pflB	S0962	-	formate acetyltransferase 1
866	 48.60	0	939996..940853	-	285	30062439	focA	S0963	-	formate transporter
867	 51.05	0	941259..943019	-	586	30062440	ycaO	S0964	-	hypothetical protein
868	 50.41	0	943974..945062	+	362	30062441	serC	S0966	-	phosphoserine aminotransferase
869	 50.78	0	945133..946416	+	427	30062442	aroA	S0967	-	3-phosphoshikimate 1-carboxyvinyltransferase
870	 54.25	0	946560..947888	+	442	30062443	yi41	S0968	-	IS4 orf
871	 49.54	0	948024..948788	+	254	30062444	ycaL	S0969	-	putative heat shock protein
872	 53.80	0	948961..949644	+	227	30062445	cmk	S0970	-	cytidylate kinase
873	 51.08	0	949755..951428	+	557	30062446	rpsA	S0971	-	30S ribosomal protein S1
874	 49.12	0	951588..951872	+	94	30062447	ihfB	S0972	-	integration host factor subunit beta
875	 50.77	0	954375..956123	+	582	30062448	msbA	S0974	-	lipid transporter ATP-binding/permease protein
876	 54.91	0	956120..957106	+	328	30062449	lpxK	S0975	-	tetraacyldisaccharide 4'-kinase
877	 52.23	0	957143..958375	+	410	30062450	ycaQ	S0976	-	hypothetical protein
878	 47.54	-1	958427..958609	+	60	30062451	ycaR	S0977	-	hypothetical protein
879	 52.48	0	958606..959352	+	248	30062452	kdsB	S0978	-	3-deoxy-manno-octulosonate cytidylyltransferase
880	 52.46	0	959506..960399	+	297	30062453	-	S0979	-	hypothetical protein
881	 52.44	0	960376..961155	-	259	30062454	ycbC	S0980	-	hypothetical protein
882	 51.40	0	961291..962076	+	261	30062455	smtA	S0981	-	putative metallothionein SmtA
883	 52.83	0	962073..963395	+	440	30062456	mukF	S0982	-	condesin subunit F
884	 52.95	0	963403..964080	+	225	30062457	mukE	S0983	-	condesin subunit E
885	 55.44	0	964080..968540	+	1486	30062458	mukB	S0984	-	cell division protein MukB
886	 54.18	0	968703..970031	+	442	30062459	-	S0985	-	IS4 orf
887	 52.71	0	970239..972086	+	615	30062460	ycbB	S0986	-	hypothetical protein
888	 50.09	0	972267..972815	+	182	30062461	ycbK	S0987	-	hypothetical protein
889	 52.01	0	972842..973489	+	215	30062462	ycbL	S0988	-	hypothetical protein
890	 51.81	0	973712..974902	-	396	30062463	aspC	S0989	-	aromatic amino acid aminotransferase
891	 47.66	0	975087..976175	-	362	30062464	ompF	S0990	-	outer membrane protein F
892	 52.82	0	976776..978176	-	466	30062465	asnC	S0991	-	asparaginyl-tRNA synthetase
893	 51.29	0	978345..979547	-	400	30062466	pncB	S0992	-	nicotinate phosphoribosyltransferase
894	 53.44	0	979813..982428	+	871	30062467	pepN	S0993	-	aminopeptidase N
895	 55.08	0	982635..983402	-	255	30062468	ssuB	S0994	-	aliphatic sulfonates transport ATP-binding subunit
896	 55.08	0	984027..984932	-	301	161486519	-	S0996	-	insertion element IS2 transposase InsD
897	 53.01	0	984890..985255	-	121	161486518	-	S0997	-	insertion sequence 2 OrfA protein
898	 56.98	+1	985538..986683	-	381	30062471	ycbN	S0999	-	alkanesulfonate monooxygenase
899	 52.50	0	986680..987639	-	319	161486517	ycbO	S1000	-	alkanesulfonate transporter substrate-binding subunit
900	 54.17	0	987632..988207	-	191	30062473	ycbP	S1001	-	NAD(P)H-dependent FMN reductase
901	 52.87	0	988345..989040	+	231	30062474	-	S1002	-	IS1 orfB, A
902	 52.98	0	989411..989914	-	167	30062475	-	S1004	-	IS1 orfB
903	 52.90	0	989833..990108	-	91	30062476	-	S1005	-	IS1 orfA
904	 47.83	0	990248..992848	+	866	30062477	ycbS	S1006	-	putative outer membrane protein
905	 48.37	0	992839..993822	+	327	30062478	-	S1007	-	fimbrial protein
906	 47.15	-1	993920..994462	+	180	30062479	-	S1008	-	putative fimbrial-like protein
907	 47.34	-1	994422..994985	+	187	30062480	-	S1009	-	putative fimbrial-like protein
908	 50.95	0	994951..995688	+	245	30062481	ycbF	S1010	-	hypotheical protein
909	 46.79	-1	995800..996810	+	336	30062482	pyrD	S1011	-	dihydroorotate dehydrogenase 2
910	 49.57	0	996948..997526	+	192	30062483	ycbW	S1012	-	hypothetical protein
911	 50.45	0	997523..998632	-	369	30062484	-	S1013	-	hypothetical protein
912	 53.96	0	998876..1000984	+	702	30062485	ycbY	S1014	-	23S rRNA m(2)G2445 methyltransferase
913	 52.15	0	1000996..1002903	+	635	30062486	uup	S1015	-	ABC transporter ATPase component
914	 52.23	0	1003033..1004286	+	417	30062487	pqiA	S1016	-	paraquat-inducible protein A
915	 50.03	0	1004291..1005931	+	546	30062488	pqiB	S1017	-	paraquat-inducible protein B
916	 52.13	0	1005928..1006491	+	187	30062489	ymbA	S1018	-	hypothetical protein
917	 54.76	0	1006747..1006914	+	55	30062490	rmf	S1019	-	ribosome modulation factor
918	 52.22	0	1006984..1007502	-	172	30062491	fabA	S1020	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
919	 51.79	0	1007571..1009331	-	586	30062492	-	S1021	-	putative ATP-dependent protease
920	 46.36	-1	1009516..1009968	+	150	30062493	ycbG	S1022	-	hypothetical protein
921	 53.20	0	1010044..1011090	-	348	30062494	ompA	S1023	-	outer membrane protein A
922	 47.65	0	1011446..1011955	-	169	30062495	sulA	S1024	-	SOS cell division inhibitor
923	 47.18	-1	1012174..1012599	+	141	30062496	-	S1025	-	hypothetical protein
924	 53.01	0	1012675..1013040	+	121	161486516	-	S1026	-	insertion sequence 2 OrfA protein
925	 56.40	+1	1013019..1013651	+	210	30062498	-	S1027	-	IS2 orfB
926	 51.99	0	1013611..1015776	-	721	30062499	-	S1028	-	hypothetical protein
927	 48.10	0	1015786..1016232	-	148	30062500	yccF	S1029	-	hypothetical protein
928	 52.94	0	1016355..1018409	+	684	30062501	helD	S1030	-	DNA helicase IV
929	 52.51	0	1018441..1018899	-	152	161486515	mgsA	S1031	-	methylglyoxal synthase
930	 50.68	0	1018995..1019657	-	220	30062503	-	S1032	-	hypothetical protein
931	 53.63	0	1019776..1020243	+	155	30062504	-	S1033	-	hypothetical protein
932	 53.93	0	1020288..1020656	-	122	30062505	yccV	S1034	-	hypothetical protein
933	 51.81	0	1020663..1021766	-	367	30062506	-	S1035	-	putative oxidoreductase
934	 51.97	0	1021948..1022226	+	92	30062507	-	S1036	-	hypothetical protein
935	 46.97	-1	1022223..1022552	-	109	161486514	yccK	S1037	-	sulfurtransferase TusE
936	 50.30	0	1022643..1023302	-	219	30062509	yccA	S1038	-	hypothetical protein
937	 55.23	0	1024022..1025140	+	372	30062510	hyaA	S1040	-	hydrogenase-1 small subunit
938	 56.13	+1	1025137..1026930	+	597	30062511	hyaB	S1041	-	hydrogenase 1 large subunit
939	 51.55	0	1026949..1027656	+	235	30062512	hyaC	S1042	-	hydrogenase 1 b-type cytochrome subunit
940	 59.01	+1	1027653..1028240	+	195	30062513	hyaD	S1043	-	hydrogenase 1 maturation protease
941	 56.89	+1	1028237..1028635	+	132	30062514	hyaE	S1044	-	hydrogenase-1 operon protein HyaE
942	 54.90	0	1028632..1029489	+	285	30062515	hyaF	S1045	-	hydrogenase-1 operon protein hyaF
943	 53.92	0	1029623..1031167	+	514	30062516	appC	S1046	-	third cytochrome oxidase, subunit I
944	 52.42	0	1031179..1032315	+	378	30062517	appB	S1047	-	third cytochrome oxidase, subunit II
945	 53.66	0	1032499..1033797	+	432	30062518	appA	S1048	-	phosphoanhydride phosphorylase
946	 51.90	0	1036098..1036544	-	148	161486513	etp	S1051	-	phosphotyrosine-protein phosphatase
947	 50.96	0	1036532..1037671	-	379	30062520	yccZ	S1052	-	exopolysaccharide export protein
948	 52.07	0	1037717..1039813	-	698	30062521	ymcA	S1053	-	hypothetical protein
949	 51.94	0	1039813..1040559	-	248	30062522	ymcB	S1054	-	hypothetical protein
950	 47.91	0	1040556..1041200	-	214	30062523	ymcC	S1055	-	putative regulator
951	 55.86	+1	1041307..1041630	-	107	30062524	ymcD	S1056	-	hypothetical protein
952	 47.89	0	1042054..1042266	-	70	30062525	cspH	S1057	-	cold shock-like protein
953	 52.90	0	1042621..1042896	+	91	30062526	-	S1058	-	IS1 orfA
954	 52.78	0	1042815..1043318	+	167	30062527	-	S1059	-	IS1 orfB
955	 45.77	-1	1043340..1043540	+	66	30062528	cspG	S1060	-	cold shock protein CspG
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.