IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
534	 48.25	0	587457..588401	+	314	30062107	farR	S0580	-	DNA-binding transcriptional repressor MngR
535	 52.87	0	588283..589152	-	289	30062108	sucD	S0581	-	succinyl-CoA synthetase subunit alpha
536	 54.76	0	589152..590318	-	388	30062109	sucC	S0582	-	succinyl-CoA synthetase subunit beta
537	 55.91	+1	590412..591629	-	405	30062110	sucB	S0583	-	dihydrolipoamide acetyltransferase
538	 55.39	0	591644..594445	-	933	30062111	kgd	S0584	-	alpha-ketoglutarate decarboxylase
539	 49.43	0	594427..594687	-	86	30062112	-	S0585	-	hypothetical protein
540	 52.02	0	594746..595462	-	238	30062113	sdhB	S0586	-	succinate dehydrogenase iron-sulfur subunit
541	 56.08	+1	595478..597244	-	588	30062114	sdhA	S0587	-	succinate dehydrogenase flavoprotein subunit
542	 51.15	0	597244..597591	-	115	30062115	sdhD	S0588	-	succinate dehydrogenase cytochrome b556 small membrane subunit
543	 49.23	0	597585..597974	-	129	161486531	sdhC	S0589	-	succinate dehydrogenase cytochrome b556 large membrane subunit
544	 49.92	0	598683..599966	+	427	30062117	gltA	S0590	-	type II citrate synthase
545	 47.62	0	600357..600923	+	188	30062118	ybgD	S0591	-	putative fimbrial-like protein
546	 49.39	0	600974..603433	+	819	30062119	ybgQ	S0592	-	putative outer membrane protein
547	 49.45	0	603448..604179	+	243	30062120	ybgP	S0593	-	putative chaperone
548	 55.59	0	605359..606450	+	363	30062121	abrB	S0595	-	putative transport protein
549	 52.65	0	606447..607238	-	263	30062122	nei	S0596	-	endonuclease VIII
550	 57.28	+1	607274..608008	-	244	30062123	ybgL	S0597	-	hypothetical protein
551	 57.23	+1	608924..609580	-	218	30062124	ybgJ	S0599	-	putative carboxylase
552	 53.36	0	609603..610346	-	247	30062125	ybgI	S0600	-	putative hydrolase-oxidase
553	 52.36	0	610617..612098	+	493	30062126	ybgH	S0601	-	putative transport protein
554	 53.28	0	612248..613666	-	472	30062127	phrB	S0602	-	deoxyribodipyrimidine photolyase
555	 49.80	0	613663..614172	-	169	30062128	ybgA	S0603	-	hypothetical protein
556	 53.47	0	614301..614588	+	95	30062129	-	S0604	-	hypothetical protein
557	 57.25	+1	615026..618412	-	1128	30062130	rhsE	S0605	-	putative Rhs-family protein
558	 52.78	0	619028..619531	-	167	30062131	-	S0606	-	IS1 orfB
559	 52.98	0	619450..619734	-	94	30062132	-	S0607	-	IS1 orfA
560	 51.69	0	620220..620426	-	68	30062133	ybfA	S0608	-	hypothetical protein
561	 54.60	0	620828..622501	+	557	30062134	kdpA	S0609	-	potassium-transporting ATPase subunit A
562	 54.62	0	624580..625152	+	190	30062135	kdpC	S0611	-	potassium-transporting ATPase subunit C
563	 50.38	0	631391..632710	+	439	30062136	potE	S0615	-	putrescine transporter
564	 55.27	0	632766..634406	-	546	30062137	pgm	S0616	-	phosphoglucomutase
565	 50.00	0	634432..634977	-	181	30062138	seqA	S0617	-	replication initiation regulator SeqA
566	 50.85	0	635162..635926	+	254	30062139	ybfF	S0618	-	hypothetical protein
567	 53.44	0	635997..636359	+	120	30062140	ybfE	S0619	-	LexA regulated protein
568	 48.59	0	636499..637029	+	176	30062141	fldA	S0620	-	flavodoxin FldA
569	 48.10	0	637318..637764	+	148	30062142	fur	S0621	-	ferric uptake regulator
570	 49.24	0	637848..638174	-	108	30062143	ybfN	S0622	-	hypothetical protein
571	 51.39	0	638211..639617	-	468	30062144	ybfM	S0623	-	hypothetical protein
572	 52.43	0	640196..641860	-	554	30062145	glnS	S0624	-	glutaminyl-tRNA synthetase
573	 54.85	0	642063..644009	-	648	30062146	nagE	S0625	-	N-acetyl glucosamine specific PTS system components IIABC
574	 48.69	0	644342..645142	+	266	30062147	nagB	S0626	-	glucosamine-6-phosphate deaminase
575	 51.96	0	645202..646350	+	382	30062148	nagA	S0627	-	N-acetylglucosamine-6-phosphate deacetylase
576	 52.91	0	646359..647579	+	406	30062149	nagC	S0628	-	transcriptional repressor of nag (N-acetylglucosamine) operon
577	 51.59	0	648776..650440	+	554	30062150	asnB	S0630	-	asparagine synthetase B
578	 56.04	+1	651676..652851	-	391	30062151	ubiF	S0642	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
579	 54.04	0	652997..654421	+	474	30062152	yleA	S0643	-	hypothetical protein
580	 53.98	0	654535..655614	+	359	30062153	ybeZ	S0644	-	putative ATP-binding protein in pho regulon
581	 51.50	0	655611..656078	+	155	30062154	ybeY	S0645	-	putative metalloprotease
582	 51.65	0	656168..657046	+	292	30062155	ybeX	S0646	-	putative transport protein
583	 55.69	+1	657071..658609	+	512	30062156	lnt	S0647	-	apolipoprotein N-acyltransferase
584	 48.73	0	659005..659913	+	302	30062157	ybeJ	S0648	-	glutamate and aspartate transporter subunit
585	 53.04	0	660083..660823	+	246	30062158	gltJ	S0649	-	glutamate/aspartate transport system permease
586	 50.22	0	660823..661497	+	224	30062159	gltK	S0650	-	glutamate/aspartate transport system permease
587	 52.34	0	661497..662222	+	241	30062160	gltL	S0651	-	ATP-binding protein of glutamate/aspartate transport system
588	 51.18	0	662340..663275	+	311	30062161	rihA	S0652	-	ribonucleoside hydrolase 1
589	 47.52	-1	665089..666540	-	483	30062162	ybeV	S0654	-	hypothetical protein
590	 48.02	0	666537..667244	-	235	30062163	ybeU	S0655	-	putative tRNA ligase
591	 42.16	-2	667346..667900	+	184	30062164	ybeT	S0656	-	hypothetical protein
592	 48.53	0	667910..669337	-	475	30062165	ybeS	S0657	-	putative enzyme
593	 45.20	-1	669334..670041	-	235	30062166	ybeR	S0658	-	hypothetical protein
594	 46.54	-1	670199..671182	+	327	30062167	ybeQ	S0659	-	hypothetical protein
595	 51.97	0	671252..671734	-	160	30062168	ybeL	S0660	-	hypothetical protein
596	 53.39	0	671969..674551	+	860	30062169	leuS	S0661	-	leucyl-tRNA synthetase
597	 52.58	0	674566..675147	+	193	30062170	rlpB	S0662	-	LPS-assembly lipoprotein RplB
598	 52.52	0	675147..676178	+	343	30062171	holA	S0663	-	DNA polymerase III subunit delta
599	 49.84	0	676180..676821	+	213	30062172	nadD	S0664	-	nicotinic acid mononucleotide adenylyltransferase
600	 50.65	0	676845..677456	+	203	30062173	phpB	S0665	-	alpha-ribazole phosphatase
601	 53.33	0	677824..678033	+	69	30062174	ybeB	S0666	-	hypothetical protein
602	 58.33	+1	678037..678504	+	155	30062175	ybeA	S0667	-	SPOUT methyltransferase superfamily protein
603	 52.73	0	678535..680436	+	633	30062176	mrdA	S0668	-	penicillin-binding protein 2
604	 51.84	0	680439..681551	+	370	30062177	mrdB	S0669	-	cell wall shape-determining protein
605	 57.48	+1	681562..682650	+	362	30062178	rlpA	S0670	-	rare lipoprotein A
606	 49.26	0	682789..684000	+	403	30062179	dacA	S0671	-	D-alanyl-D-alanine carboxypeptidase fraction A
607	 46.21	-1	684111..684374	+	87	30062180	ybeD	S0672	-	hypothetical protein
608	 47.66	0	684475..685116	+	213	161486530	lipB	S0673	-	lipoyltransferase
609	 46.94	-1	685528..686328	+	266	30062182	ybeF	S0674	-	putative DNA-binding transcriptional regulator
610	 53.42	0	686537..687502	+	321	30062183	lipA	S0675	-	lipoyl synthase
611	 50.00	0	687603..687806	-	67	30062184	tatE	S0676	-	twin arginine translocase protein E
612	 54.08	0	687935..688498	-	187	30062185	ybeM	S0677	-	putative amidase
613	 48.96	0	688816..689199	+	127	30062186	ccrB	S0679	-	camphor resistance protein CrcB
614	 43.81	-1	689253..689462	-	69	30062187	cspE	S0680	-	cold shock protein CspE
615	 46.88	-1	689637..690197	-	186	30062188	crcA	S0681	-	palmitoyl transferase for Lipid A
616	 51.15	0	690786..692171	+	461	30062189	dcuC	S0682	-	C4-dicarboxylate transporter DcuC
617	 44.31	-1	692891..693400	-	169	30062190	-	S0684	-	putative repressor protein
618	 51.07	0	693963..695417	+	484	30062191	-	S0685	-	putative phage transposase
619	 46.86	-1	695479..695781	+	100	30062192	-	S0686	-	IS600 orfA
620	 52.24	0	695922..696635	+	237	30062193	-	S0687	-	IS600 orfB
621	 49.19	0	696632..696877	-	81	30062194	-	S0688	-	hypothetical protein
622	 53.29	0	696919..697860	-	313	30062195	-	S0689	-	putative bacteriophage protein
623	 49.02	0	697872..697973	-	33	30062196	-	S0690	-	hypothetical protein
624	 54.62	0	698005..698361	-	118	30062197	-	S0691	-	putative bacteriophage protein
625	 53.73	0	698365..699585	-	406	30062198	-	S0692	-	putative bacteriophage protein
626	 54.47	0	699589..700047	-	152	30062199	-	S0693	-	putative bacteriophage protein
627	 53.99	0	700223..701689	-	488	30062200	-	S0694	-	putative bacteriophage protein
628	 49.15	0	701689..701922	-	77	30062201	-	S0695	-	hypothetical protein
629	 48.89	0	701910..702449	-	179	30062202	-	S0696	-	putative bacteriophage protein
630	 55.41	0	702434..703339	-	301	161486529	-	S0697	-	insertion element IS2 transposase InsD
631	 53.01	0	703297..703662	-	121	161486528	-	S0698	-	insertion sequence 2 OrfA protein
632	 47.76	0	703738..704361	-	207	30062205	-	S0699	-	putative bacteriophage protein
633	 51.11	0	704372..705136	-	254	30062206	-	S0700	-	putative bacteriophage protein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.