IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 2457T



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.60 STD DEV: 4.04
Shigella flexneri 2a str. 2457T, complete genome - 1..4599354
4061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2775	 54.24	0	3129244..3130362	-	372	30064352	-	S3245	-	hydrogenase 2 small subunit
2776	 45.14	-1	3130551..3130838	-	95	30064353	-	S3246	-	hypothetical protein
2777	 51.34	0	3130957..3131367	-	136	30064354	-	S3247	-	hypothetical protein
2778	 51.97	0	3132001..3133041	+	346	30064355	-	S3249	-	aldo-keto reductase
2779	 47.47	-1	3133081..3133575	-	164	30064356	yqhA	S3250	-	hypothetical protein
2780	 54.58	0	3133766..3134650	+	294	30064357	yghA	S3251	-	oxidoreductase
2781	 48.78	0	3134826..3135071	+	81	30064358	-	S3252	-	hypothetical protein
2782	 50.23	0	3134922..3135347	-	141	30064359	exbD	S3253	-	biopolymer transport protein ExbD
2783	 52.65	0	3135354..3136088	-	244	30064360	exbB	S3254	-	biopolymer transport protein ExbB
2784	 41.03	-2	3136081..3136236	-	51	30064361	-	S3255	-	hypothetical protein
2785	 51.68	0	3136340..3137527	+	395	30064362	metC	S3256	-	cystathionine beta-lyase
2786	 50.76	0	3137667..3138326	+	219	30064363	yghB	S3257	-	hypothetical protein
2787	 50.09	0	3138366..3139493	-	375	30064364	yqhC	S3259	-	putative ARAC-type regulatory protein
2788	 54.55	0	3139459..3140622	+	387	30064365	yqhD	S3258	-	putative oxidoreductase
2789	 51.09	0	3140727..3141554	+	275	161486438	dkgA	S3260	-	2,5-diketo-D-gluconate reductase A
2790	 46.49	-1	3141754..3142680	+	308	30064367	yqhG	S3261	-	hypothetical protein
2791	 47.67	0	3142731..3142988	+	85	30064368	yqhH	S3262	-	putative outer membrane lipoprotein
2792	 52.98	0	3143031..3144272	-	413	30064369	-	S3263	-	hypothetical protein
2793	 56.33	+1	3145361..3146773	-	470	30064370	sufI	S3265	-	repressor protein for FtsI
2794	 49.46	0	3146848..3147585	-	245	30064371	plsC	S3266	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
2795	 54.76	0	3147819..3150077	-	752	30064372	parC	S3267	-	DNA topoisomerase IV subunit A
2796	 53.21	0	3150623..3151105	-	160	30064373	-	S3268	-	hypothetical protein
2797	 50.38	0	3151158..3151550	-	130	30064374	ygiW	S3269	-	hypothetical protein
2798	 51.36	0	3151702..3152361	+	219	30064375	ygiX	S3270	-	DNA-binding transcriptional regulator QseB
2799	 52.55	0	3152358..3153632	+	424	30064376	ygiY	S3271	-	sensor protein QseC
2800	 34.23	-2	3153678..3154010	-	110	30064377	-	S3272	-	hypothetical protein
2801	 49.66	0	3154329..3154910	+	193	30064378	mdaB	S3273	-	modulator of drug activity B
2802	 51.43	0	3154941..3155255	+	104	30064379	ygiN	S3274	-	hypothetical protein
2803	 53.88	0	3155303..3157195	-	630	30064380	parE	S3275	-	DNA topoisomerase IV subunit B
2804	 53.61	0	3157224..3157805	-	193	30064381	yqiA	S3276	-	esterase YqiA
2805	 56.28	+1	3157805..3158632	-	275	30064382	icc	S3277	-	cyclic 3',5'-adenosine monophosphate phosphodiesterase
2806	 48.70	0	3158657..3159079	-	140	30064383	yqiB	S3278	-	hypothetical protein
2807	 50.63	0	3159080..3159709	-	209	30064384	nudF	S3279	-	ADP-ribose pyrophosphatase NudF
2808	 51.42	0	3159914..3161395	+	493	30064385	tolC	S3280	-	outer membrane channel protein
2809	 52.87	0	3161395..3161655	+	86	30064386	ygiA	S3281	-	hypothetical protein
2810	 56.10	+1	3161543..3162214	+	223	161486437	ygiB	S3282	-	hypothetical protein
2811	 50.47	0	3162220..3163380	+	386	30064388	ygiC	S3283	-	putative synthetase/amidase
2812	 53.68	0	3163418..3164233	-	271	30064389	ygiD	S3284	-	hypothetical protein
2813	 53.36	0	3164349..3165122	+	257	30064390	ygiE	S3285	-	zinc transporter ZupT
2814	 52.75	0	3165611..3166264	-	217	30064391	ribB	S3286	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
2815	 48.15	0	3166578..3166928	+	116	30064392	-	S3287	-	hypothetical protein
2816	 52.73	0	3167184..3167549	+	121	161486436	-	S3288	-	insertion sequence 2 OrfA protein
2817	 55.99	+1	3167507..3168358	+	283	161486435	-	S3289	-	insertion sequence 2 OrfB protein
2818	 52.90	0	3168409..3168684	+	91	30064395	-	S3290	-	IS1 orfA
2819	 52.98	0	3168603..3169106	+	167	30064396	-	S3291	-	IS1 orfB
2820	 49.28	0	3169116..3169391	+	91	30064397	-	S3292	-	IS4 orf
2821	 45.77	-1	3169778..3169978	-	66	30064398	glgS	S3294	-	glycogen synthesis protein GlgS
2822	 54.00	0	3170300..3170599	+	99	30064399	-	S3295	-	IS1 orfA
2823	 56.42	+1	3173108..3174541	-	477	30064400	-	S3298	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
2824	 55.30	0	3174589..3177429	-	946	30064401	glnE	S3299	-	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
2825	 54.69	0	3177452..3178753	-	433	30064402	ygiF	S3300	-	hypothetical protein
2826	 52.33	0	3178995..3179615	+	206	30064403	ygiM	S3301	-	putative signal transduction protein
2827	 56.17	+1	3179679..3180917	+	412	30064404	cca	S3302	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
2828	 52.55	0	3181079..3181900	-	273	30064405	uppP	S3303	-	undecaprenyl pyrophosphate phosphatase
2829	 50.68	0	3181991..3182359	-	122	30064406	folB	S3304	-	bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase
2830	 53.40	0	3182464..3183081	+	205	30064407	ygiH	S3305	-	putative glycerol-3-phosphate acyltransferase PlsY
2831	 49.10	0	3183024..3184025	-	333	30064408	ygiP	S3306	-	transcriptional activator TtdR
2832	 53.33	0	3184235..3185044	+	269	30064409	ttdA	S3307	-	tartrate dehydratase subunit alpha
2833	 53.30	0	3185072..3185677	+	201	30064410	ttdB	S3308	-	L(+)-tartrate dehydratase subunit beta
2834	 55.53	0	3185725..3187188	+	487	30064411	ygjE	S3309	-	hypothetical protein
2835	 57.00	+1	3187231..3188244	-	337	30064412	ygjD	S3310	-	O-sialoglycoprotein endopeptidase
2836	 51.85	0	3188482..3188697	+	71	30064413	rpsU	S3311	-	30S ribosomal protein S21
2837	 52.29	0	3188808..3190553	+	581	30064414	dnaG	S3312	-	DNA primase
2838	 53.04	0	3190748..3192574	+	608	30064415	rpoD	S3313	-	RNA polymerase sigma factor RpoD
2839	 54.33	0	3192746..3194074	+	442	30064416	-	S3314	-	IS4 orf
2840	 53.69	0	3195888..3196511	+	207	30064417	yqjI	S3318	-	hypothetical protein
2841	 55.08	0	3198576..3199982	+	468	161486434	ygjG	S3320	-	putrescine--2-oxoglutarate aminotransferase
2842	 51.32	0	3200573..3201556	+	327	30064419	ebgR	S3322	-	DNA-binding transcriptional repressor EbgR
2843	 54.49	0	3201739..3204825	+	1028	30064420	ebgA	S3323	-	cryptic beta-D-galactosidase subunit alpha
2844	 44.89	-1	3204822..3205271	+	149	30064421	ebgC	S3324	-	cryptic beta-D-galactosidase subunit beta
2845	 49.86	0	3205334..3206767	+	477	30064422	ygjI	S3325	-	putative oxidoreductase
2846	 54.42	0	3207989..3210340	+	783	30064423	ygjK	S3327	-	glycosyl hydrolase
2847	 57.50	+1	3210566..3212584	+	672	30064424	ygjL	S3328	-	putative NADPH dehydrogenase
2848	 48.44	0	3212629..3213045	-	138	30064425	ygjM	S3329	-	hypothetical protein
2849	 38.41	-2	3213042..3213356	-	104	30064426	ygjN	S3330	-	hypothetical protein
2850	 53.56	0	3213641..3214777	-	378	30064427	ygjO	S3331	-	putative enzyme
2851	 50.74	0	3214826..3215365	+	179	30064428	ygjP	S3332	-	hypothetical protein
2852	 51.95	0	3215442..3216134	+	230	30064429	ygjQ	S3333	-	hypothetical protein
2853	 52.61	0	3216195..3217211	+	338	30064430	ygjR	S3334	-	hypothetical protein
2854	 54.14	0	3217482..3218447	+	321	30064431	ygjT	S3335	-	putative transport protein
2855	 54.86	0	3219032..3220276	+	414	30064432	ygjU	S3336	-	serine/threonine transporter SstT
2856	 50.00	0	3220281..3220832	-	183	30064433	ygjV	S3337	-	hypothetical protein
2857	 54.23	0	3220915..3222402	-	495	30064434	uxaA	S3338	-	altronate hydrolase
2858	 54.00	0	3222417..3223829	-	470	30064435	uxaC	S3339	-	glucuronate isomerase
2859	 54.35	0	3224314..3225612	+	432	30064436	exuT	S3340	-	transport protein of hexuronates
2860	 49.92	0	3225700..3226332	-	210	30064437	-	S3341	-	hypothetical protein
2861	 47.84	0	3226785..3228776	-	663	30064438	-	S3342	-	hypothetical protein
2862	 52.90	0	3228942..3229217	+	91	30064439	-	S3343	-	IS1 orfA
2863	 52.98	0	3229136..3229639	+	167	30064440	-	S3344	-	IS1 orfB
2864	 49.81	0	3229747..3230523	+	258	30064441	exuR	S3345	-	DNA-binding transcriptional repressor ExuR
2865	 50.38	0	3230868..3231530	+	220	30064442	yqjA	S3346	-	hypothetical protein
2866	 54.20	0	3231549..3231917	+	122	30064443	yqjB	S3347	-	hypothetical protein
2867	 54.25	0	3232456..3232761	+	101	30064444	yqjD	S3349	-	hypothetical protein
2868	 52.84	0	3232764..3233168	+	134	30064445	yqjE	S3350	-	hypothetical protein
2869	 56.00	+1	3233158..3233457	+	99	30064446	-	S3351	-	hypothetical protein
2870	 51.57	0	3234009..3234995	+	328	30064447	yqjG	S3353	-	putative transferase
2871	 51.22	0	3235288..3235656	+	122	30064448	yhaH	S3354	-	putative cytochrome
2872	 55.74	+1	3235863..3236759	-	298	30064449	yhaJ	S3356	-	putative LYSR-type transcriptional regulator
2873	 52.85	0	3236864..3237565	+	233	30064450	yhaK	S3357	-	hypothetical protein
2874	 52.12	0	3237588..3237752	+	54	30064451	yhaL	S3358	-	hypothetical protein
51.60	MEAN

4.04	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.