IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
8	 69.41	0	8786..9661	-	291	146276066	-	Rsph17025_0008	-	phosphoserine phosphatase SerB
9	 68.13	0	9801..10958	+	385	146276067	-	Rsph17025_0009	-	phosphoserine aminotransferase
10	 65.04	0	11037..12632	+	531	146276068	-	Rsph17025_0010	-	D-3-phosphoglycerate dehydrogenase
11	 68.58	0	12675..13460	+	261	146276069	-	Rsph17025_0011	-	metallophosphoesterase
12	 72.48	+1	13543..14712	+	389	146276070	-	Rsph17025_0012	-	beta-ketothiolase
13	 74.22	+1	14722..16746	-	674	146276071	-	Rsph17025_0013	-	penicillin-binding protein 1C
14	 71.90	+1	16743..22169	-	1808	146276072	-	Rsph17025_0014	-	alpha-2-macroglobulin domain-containing protein
15	 68.78	0	22282..24888	+	868	146276073	-	Rsph17025_0015	-	histidine kinase
16	 69.90	0	24904..25677	-	257	146276074	-	Rsph17025_0016	-	hypothetical protein
17	 71.51	0	25677..27722	-	681	146276075	-	Rsph17025_0017	-	ATP-dependent DNA helicase RecQ
18	 59.03	-2	27780..28067	-	95	146276076	-	Rsph17025_0018	-	protein of unknown function YGGT
19	 70.08	0	28197..28724	+	175	146276077	-	Rsph17025_0019	-	hypothetical protein
20	 69.15	0	28792..30162	+	456	146276078	-	Rsph17025_0020	-	major facilitator transporter
21	 70.41	0	30162..31043	+	293	146276079	mepA	Rsph17025_0021	-	penicillin-insensitive murein endopeptidase
22	 69.57	0	31016..31909	+	297	146276080	-	Rsph17025_0022	-	hypothetical protein
23	 68.10	0	31991..32617	+	208	146276081	-	Rsph17025_0023	-	hypothetical protein
24	 71.83	+1	32896..33321	+	141	146276082	-	Rsph17025_0024	-	hypothetical protein
25	 65.74	0	33334..34626	-	430	146276083	-	Rsph17025_0025	-	nicotinate phosphoribosyltransferase
26	 69.97	0	34628..35233	-	201	146276084	-	Rsph17025_0026	-	nicotinamidase
27	 68.97	0	35345..36211	+	288	146276085	-	Rsph17025_0027	-	short-chain dehydrogenase/reductase SDR
28	 71.32	0	36208..37131	+	307	146276086	-	Rsph17025_0028	-	2-keto-3-deoxy-galactonokinase
29	 66.79	0	37089..38699	-	536	146276087	-	Rsph17025_0029	-	alpha amylase, catalytic region
30	 67.67	0	38934..40235	+	433	146276088	-	Rsph17025_0030	-	major facilitator transporter
31	 70.84	0	40365..41537	+	390	146276089	-	Rsph17025_0031	-	major facilitator transporter
32	 72.27	+1	41586..42620	+	344	146276090	-	Rsph17025_0032	-	glycosyl transferase, group 1
33	 72.09	+1	42617..43243	+	208	146276091	-	Rsph17025_0033	-	hypothetical protein
34	 64.32	-1	43357..44379	+	340	146276092	-	Rsph17025_0034	-	aspartate-semialdehyde dehydrogenase
35	 68.53	0	44384..44974	+	196	146276093	-	Rsph17025_0035	-	hypothetical protein
36	 65.27	0	44991..45635	-	214	146276094	-	Rsph17025_0036	-	carbonate dehydratase
37	 66.13	0	45785..46159	+	124	146276095	-	Rsph17025_0037	-	hypothetical protein
38	 71.21	0	46231..47616	+	461	146276096	-	Rsph17025_0038	-	leucyl aminopeptidase
39	 69.99	0	47616..48428	+	270	146276097	-	Rsph17025_0039	-	NLP/P60 protein
40	 72.35	+1	48444..49658	-	404	146276098	-	Rsph17025_0040	-	hypothetical protein
41	 67.26	0	49673..50851	-	392	146276099	-	Rsph17025_0041	-	radical SAM protein
42	 67.23	0	50977..51507	-	176	146276100	-	Rsph17025_0042	-	hypothetical protein
43	 70.30	0	51674..52663	+	329	146276101	-	Rsph17025_0043	-	L-asparaginase II
44	 66.11	0	52938..53297	+	119	146276102	-	Rsph17025_0044	-	hypothetical protein
45	 65.06	0	53314..54120	-	268	146276103	-	Rsph17025_0045	-	hypothetical protein
46	 67.52	0	54204..55028	+	274	146276104	dapD	Rsph17025_0046	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
47	 67.27	0	55115..55447	+	110	146276105	-	Rsph17025_0047	-	hypothetical protein
48	 69.20	0	55504..56646	+	380	146276106	-	Rsph17025_0048	-	succinyl-diaminopimelate desuccinylase
49	 70.98	0	56643..57059	+	138	146276107	-	Rsph17025_0049	-	GCN5-related N-acetyltransferase
50	 70.75	0	57105..59357	+	750	146276108	-	Rsph17025_0050	-	ribonuclease R
51	 73.30	+1	59542..60807	+	421	146276109	-	Rsph17025_0051	-	lytic murein transglycosylase
52	 61.41	-1	60935..62380	+	481	146276110	-	Rsph17025_0052	-	hypothetical protein
53	 60.94	-2	62387..63346	-	319	146276111	-	Rsph17025_0053	-	integrase catalytic subunit
54	 66.67	0	63450..63587	+	45	146276112	-	Rsph17025_0054	-	hypothetical protein
55	 74.98	+1	63639..65249	-	536	146276113	-	Rsph17025_0055	-	hypothetical protein
56	 67.77	0	65319..65591	-	90	146276114	-	Rsph17025_0056	-	hypothetical protein
57	 67.34	0	65804..66544	+	246	146276115	-	Rsph17025_0057	-	hypothetical protein
58	 63.82	-1	66633..66878	+	81	146276116	-	Rsph17025_0058	-	hypothetical protein
59	 73.65	+1	66891..68078	+	395	146276117	-	Rsph17025_0059	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
60	 74.67	+1	68078..69076	+	332	146276118	-	Rsph17025_0060	-	tetraacyldisaccharide 4'-kinase
61	 70.77	0	69087..70232	-	381	146276119	-	Rsph17025_0061	-	L-carnitine dehydratase/bile acid-inducible protein F
62	 64.88	0	70229..70900	-	223	146276120	-	Rsph17025_0062	-	DSBA oxidoreductase
63	 71.00	0	70912..71442	-	176	146276121	-	Rsph17025_0063	-	hypothetical protein
64	 72.61	+1	71524..72633	+	369	146276122	-	Rsph17025_0064	-	A/G-specific adenine glycosylase
65	 67.61	0	72670..73947	+	425	146276123	-	Rsph17025_0065	-	alkane 1-monooxygenase
66	 66.22	0	74102..75220	-	372	146276124	-	Rsph17025_0066	-	DNA methylase N-4/N-6 domain-containing protein
67	 67.29	0	75309..75947	-	212	146276125	-	Rsph17025_0067	-	ribonuclease H
68	 74.51	+1	76173..76427	-	84	146276126	-	Rsph17025_0068	-	hypothetical protein
69	 73.43	+1	76424..76837	-	137	146276127	-	Rsph17025_0069	-	ribonuclease P protein component
70	 69.63	0	76859..76993	-	44	146276128	-	Rsph17025_0070	-	ribosomal protein L34
71	 70.30	0	77243..77902	+	219	146276129	-	Rsph17025_0071	-	ribosomal protein S16
72	 72.19	+1	77902..79314	+	470	146276130	-	Rsph17025_0072	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
73	 69.38	0	79371..80768	+	465	146276131	-	Rsph17025_0073	-	integral membrane sensor signal transduction histidine kinase
74	 66.59	0	80830..82218	-	462	146276132	-	Rsph17025_0074	-	dihydrolipoamide dehydrogenase
75	 68.44	0	82782..84302	-	506	146276133	-	Rsph17025_0076	-	dihydrolipoamide acetyltransferase
76	 65.05	0	84305..87268	-	987	146276134	kgd	Rsph17025_0077	-	alpha-ketoglutarate decarboxylase
77	 66.89	0	87324..88208	-	294	146276135	-	Rsph17025_0078	-	succinyl-CoA synthetase, alpha subunit
78	 64.99	0	88213..89406	-	397	146276136	sucC	Rsph17025_0079	-	succinyl-CoA synthetase subunit beta
79	 67.29	0	89636..90598	-	320	146276137	-	Rsph17025_0080	-	malate dehydrogenase
80	 67.07	0	90800..91537	+	245	146276138	-	Rsph17025_0081	-	hypothetical protein
81	 67.02	0	91624..92481	+	285	146276139	-	Rsph17025_0082	-	citrate (pro-3S)-lyase
82	 66.49	0	92490..93044	+	184	146276140	-	Rsph17025_0083	-	NnrU family protein
83	 64.22	-1	93041..93244	+	67	146276141	-	Rsph17025_0084	-	hypothetical protein
84	 66.86	0	93245..94276	+	343	146276142	-	Rsph17025_0085	-	dehydratase
85	 65.62	0	94492..94875	+	127	146276143	-	Rsph17025_0086	-	succinate dehydrogenase, cytochrome b subunit
86	 65.05	0	94887..95258	+	123	146276144	-	Rsph17025_0087	-	hypothetical protein
87	 68.05	0	95269..97071	+	600	146276145	sdhA	Rsph17025_0088	-	succinate dehydrogenase flavoprotein subunit
88	 73.83	+1	97071..97391	+	106	146276146	-	Rsph17025_0089	-	hypothetical protein
89	 70.33	0	97395..97667	+	90	146276147	-	Rsph17025_0090	-	hypothetical protein
90	 63.45	-1	97686..98462	+	258	146276148	sdhB	Rsph17025_0091	-	succinate dehydrogenase iron-sulfur subunit
91	 65.56	0	98514..98876	-	120	146276149	-	Rsph17025_0092	-	hypothetical protein
92	 71.58	0	98970..99620	-	216	146276150	-	Rsph17025_0093	-	GntR family transcriptional regulator
93	 70.45	0	99653..100339	-	228	146276151	-	Rsph17025_0094	-	hypothetical protein
94	 61.15	-2	100453..100833	+	126	146276152	-	Rsph17025_0095	-	hypothetical protein
95	 65.00	0	101961..102260	-	99	146276153	-	Rsph17025_0096	-	hypothetical protein
96	 73.92	+1	102650..103228	-	192	146276154	-	Rsph17025_0097	-	hypothetical protein
97	 61.90	-1	103498..104148	+	216	146276155	-	Rsph17025_0098	-	hypothetical protein
98	 70.83	0	104316..104771	-	151	146276156	-	Rsph17025_0099	-	hypothetical protein
99	 72.51	+1	104749..105159	-	136	146276157	-	Rsph17025_0100	-	hypothetical protein
100	 73.88	+1	105143..105655	-	170	146276158	-	Rsph17025_0101	-	hypothetical protein
101	 70.87	0	105663..106043	-	126	146276159	-	Rsph17025_0102	-	hypothetical protein
102	 66.27	0	106103..107122	-	339	146276160	-	Rsph17025_0103	-	hypothetical protein
103	 72.44	+1	107139..108524	-	461	146276161	-	Rsph17025_0104	-	peptidase S49
104	 69.06	0	108980..109522	-	180	146276162	-	Rsph17025_0105	-	hypothetical protein
105	 71.20	0	109519..109893	-	124	146276163	-	Rsph17025_0106	-	hypothetical protein
106	 69.86	0	110109..110672	-	187	146276164	-	Rsph17025_0107	-	hypothetical protein
107	 69.67	0	110665..110997	-	110	146276165	-	Rsph17025_0108	-	hypothetical protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.