IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2504	 66.11	0	2569224..2569940	-	238	146278562	rpsC	Rsph17025_2528	-	30S ribosomal protein S3
2505	 62.20	-1	2569940..2570320	-	126	146278563	rplV	Rsph17025_2529	-	50S ribosomal protein L22
2506	 57.71	-2	2570324..2570602	-	92	146278564	rpsS	Rsph17025_2530	-	30S ribosomal protein S19
2507	 67.02	0	2570606..2571445	-	279	146278565	rplB	Rsph17025_2531	-	50S ribosomal protein L2
2508	 60.61	-2	2571568..2571864	-	98	146278566	rplW	Rsph17025_2532	-	50S ribosomal protein L23
2509	 64.57	-1	2571861..2572481	-	206	146278567	rplD	Rsph17025_2533	-	50S ribosomal protein L4
2510	 66.39	0	2572471..2573190	-	239	146278568	rplC	Rsph17025_2534	-	50S ribosomal protein L3
2511	 62.14	-1	2573204..2573512	-	102	146278569	rpsJ	Rsph17025_2535	-	30S ribosomal protein S10
2512	 64.46	-1	2573585..2574760	-	391	146278570	-	Rsph17025_2536	-	elongation factor Tu
2513	 64.21	-1	2574835..2576952	-	705	146278571	-	Rsph17025_2537	-	elongation factor G
2514	 63.91	-1	2576978..2577448	-	156	146278572	-	Rsph17025_2538	-	30S ribosomal protein S7
2515	 62.10	-1	2577461..2577832	-	123	146278573	rpsL	Rsph17025_2539	-	30S ribosomal protein S12
2516	 68.50	0	2578045..2578971	-	308	146278574	-	Rsph17025_2540	-	hypothetical protein
2517	 64.81	-1	2579147..2583394	-	1415	146278575	-	Rsph17025_2541	-	DNA-directed RNA polymerase subunit beta'
2518	 65.26	0	2583476..2587609	-	1377	146278576	rpoB	Rsph17025_2542	-	DNA-directed RNA polymerase subunit beta
2519	 61.60	-1	2587855..2588229	-	124	146278577	rplL	Rsph17025_2543	-	50S ribosomal protein L7/L12
2520	 63.76	-1	2588299..2588814	-	171	146278578	rplJ	Rsph17025_2544	-	50S ribosomal protein L10
2521	 66.95	0	2589051..2589749	-	232	146278579	rplA	Rsph17025_2545	-	50S ribosomal protein L1
2522	 65.12	0	2589753..2590205	-	150	146278580	rplK	Rsph17025_2546	-	50S ribosomal protein L11
2523	 63.50	-1	2590298..2590834	-	178	146278581	-	Rsph17025_2547	-	NusG antitermination factor
2524	 62.56	-1	2590996..2591190	-	64	146278582	secE	Rsph17025_2548	-	preprotein translocase subunit SecE
2525	 64.46	-1	2591531..2592706	-	391	146278583	-	Rsph17025_2549	-	elongation factor Tu
2526	 66.15	0	2592808..2593383	-	191	146278584	-	Rsph17025_2550	-	hypothetical protein
2527	 68.27	0	2593532..2595835	-	767	146278585	-	Rsph17025_2551	-	DNA topoisomerase IV subunit A
2528	 73.93	+1	2595968..2596504	+	178	146278586	-	Rsph17025_2552	-	SH3 type 3 domain-containing protein
2529	 69.98	0	2596593..2597408	+	271	146278587	-	Rsph17025_2553	-	short-chain dehydrogenase/reductase SDR
2530	 62.86	-1	2597535..2597744	+	69	146278588	-	Rsph17025_2554	-	hypothetical protein
2531	 69.08	0	2597745..2598323	+	192	146278589	-	Rsph17025_2555	-	ATP--cobalamin adenosyltransferase
2532	 65.49	0	2598454..2599215	+	253	146278590	-	Rsph17025_2556	-	electron transfer flavoprotein beta-subunit
2533	 69.36	0	2599215..2600141	+	308	146278591	-	Rsph17025_2557	-	electron transfer flavoprotein, alpha subunit
2534	 67.03	0	2600190..2601014	-	274	146278592	-	Rsph17025_2558	-	hypothetical protein
2535	 63.81	-1	2601183..2602058	+	291	146278593	-	Rsph17025_2559	-	3-hydroxybutyryl-CoA dehydrogenase
2536	 65.19	0	2602071..2602340	-	89	146278594	-	Rsph17025_2560	-	phosphotransferase system, phosphocarrier protein HPr
2537	 67.42	0	2602337..2602735	-	132	146278595	-	Rsph17025_2561	-	PTS system fructose subfamily IIA component
2538	 67.55	0	2602732..2603640	-	302	146278596	-	Rsph17025_2562	-	hypothetical protein
2539	 67.60	0	2603662..2604090	-	142	146278597	-	Rsph17025_2563	-	HPr kinase
2540	 67.57	0	2604087..2605739	-	550	146278598	-	Rsph17025_2564	-	integral membrane sensor signal transduction histidine kinase
2541	 62.70	-1	2605927..2606556	+	209	146278599	-	Rsph17025_2565	-	hypothetical protein
2542	 65.23	0	2606871..2608469	+	532	146278600	-	Rsph17025_2566	-	phosphoenolpyruvate carboxykinase
2543	 67.57	0	2608635..2610302	+	555	146278601	-	Rsph17025_2567	-	acyl-CoA dehydrogenase domain-containing protein
2544	 72.97	+1	2610335..2611048	-	237	146278602	recO	Rsph17025_2568	-	DNA repair protein RecO
2545	 71.73	0	2611073..2611408	-	111	146278603	-	Rsph17025_2569	-	hypothetical protein
2546	 68.74	0	2611405..2612319	-	304	146278604	era	Rsph17025_2570	-	GTP-binding protein Era
2547	 72.32	+1	2612312..2613001	-	229	146278605	-	Rsph17025_2571	-	ribonuclease III
2548	 63.88	-1	2612998..2613786	-	262	146278606	-	Rsph17025_2572	-	signal peptidase I
2549	 69.32	0	2613856..2614269	-	137	146278607	acpS	Rsph17025_2573	-	4'-phosphopantetheinyl transferase
2550	 71.20	0	2614292..2615041	-	249	146278608	-	Rsph17025_2574	-	pyridoxal phosphate biosynthetic protein PdxJ
2551	 65.60	0	2615087..2615743	-	218	146278609	-	Rsph17025_2575	-	hypothetical protein
2552	 65.44	0	2615762..2617879	-	705	146278610	-	Rsph17025_2576	-	(p)ppGpp synthetase I, SpoT/RelA
2553	 64.69	-1	2617910..2618263	-	117	146278611	-	Rsph17025_2577	-	DNA-directed RNA polymerase subunit omega
2554	 65.92	0	2618347..2618883	-	178	146278612	-	Rsph17025_2578	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2555	 62.83	-1	2619074..2619646	+	190	146278613	-	Rsph17025_2579	-	hypothetical protein
2556	 68.12	0	2619775..2620734	+	319	146278614	-	Rsph17025_2580	-	hydroxymethylbutenyl pyrophosphate reductase
2557	 67.33	0	2620752..2621204	+	150	146278615	-	Rsph17025_2581	-	hypothetical protein
2558	 67.92	0	2621211..2622248	-	345	146278616	-	Rsph17025_2582	-	alanine racemase
2559	 68.55	0	2622959..2623330	+	123	146278617	-	Rsph17025_2583	-	hypothetical protein
2560	 75.81	+2	2623327..2624310	+	327	146278618	-	Rsph17025_2584	-	peptidase S49
2561	 58.50	-2	2624372..2624824	-	150	146278619	-	Rsph17025_2585	-	GCN5-related N-acetyltransferase
2562	 68.40	0	2625468..2625698	+	76	146278620	-	Rsph17025_2586	-	hypothetical protein
2563	 72.03	+1	2626307..2626567	+	86	146278621	-	Rsph17025_2587	-	hypothetical protein
2564	 69.92	0	2626569..2628473	+	634	146278622	-	Rsph17025_2588	-	Ig family protein
2565	 64.24	-1	2628657..2628944	+	95	146278623	-	Rsph17025_2589	-	hypothetical protein
2566	 69.02	0	2628935..2631358	+	807	146278624	-	Rsph17025_2590	-	hypothetical protein
2567	 65.77	0	2631387..2632163	-	258	146278625	-	Rsph17025_2591	-	enoyl-CoA hydratase/isomerase
2568	 70.42	0	2632224..2633075	-	283	146278626	-	Rsph17025_2592	-	formamidopyrimidine-DNA glycosylase
2569	 63.61	-1	2633169..2633921	+	250	146278627	-	Rsph17025_2593	-	ubiquinone/menaquinone biosynthesis methyltransferase
2570	 68.04	0	2633923..2635452	+	509	146278628	-	Rsph17025_2594	-	2-polyprenylphenol 6-hydroxylase
2571	 68.49	0	2635447..2636103	-	218	146278629	flgD	Rsph17025_2595	-	flagellar basal body rod modification protein
2572	 71.29	0	2636112..2637128	-	338	146278630	-	Rsph17025_2596	-	hypothetical protein
2573	 65.59	0	2638484..2638762	+	92	146278631	-	Rsph17025_2597	-	hypothetical protein
2574	 71.68	0	2638752..2639090	+	112	146278632	-	Rsph17025_2598	-	hypothetical protein
2575	 69.26	0	2639101..2640411	-	436	146278633	-	Rsph17025_2599	-	FliI/YscN family ATPase
2576	 67.45	0	2640495..2640878	+	127	146278634	flgB	Rsph17025_2600	-	flagellar basal body rod protein FlgB
2577	 63.78	-1	2640881..2641261	+	126	146278635	flgC	Rsph17025_2601	-	flagellar basal body rod protein FlgC
2578	 69.76	0	2641275..2641565	+	96	146278636	fliE	Rsph17025_2602	-	flagellar hook-basal body protein FliE
2579	 65.17	0	2641565..2641831	+	88	146278637	-	Rsph17025_2603	-	export protein FliQ
2580	 67.50	0	2641833..2642552	+	239	146278638	flgF	Rsph17025_2604	-	flagellar basal body rod protein FlgF
2581	 66.92	0	2642549..2643334	+	261	146278639	flgG	Rsph17025_2605	-	flagellar basal body rod protein FlgG
2582	 70.71	0	2643334..2643753	+	139	146278640	flgA	Rsph17025_2606	-	flagellar basal body P-ring biosynthesis protein FlgA
2583	 66.94	0	2643764..2644483	+	239	146278641	flgH	Rsph17025_2607	-	flagellar basal body L-ring protein
2584	 60.30	-2	2644641..2645237	-	198	146278642	-	Rsph17025_2608	-	hypothetical protein
2585	 64.40	-1	2645587..2646555	-	322	146278643	-	Rsph17025_2610	-	transposase, IS4 family protein
2586	 66.11	0	2647135..2648214	-	359	146278644	flhB	Rsph17025_2611	-	flagellar biosynthesis protein FlhB
2587	 68.47	0	2648211..2648987	-	258	146278645	-	Rsph17025_2612	-	type III secretion system inner membrane R protein
2588	 67.34	0	2648984..2651053	-	689	146278646	flhA	Rsph17025_2613	-	flagellar biosynthesis protein FlhA
2589	 69.71	0	2651058..2651747	-	229	146278647	-	Rsph17025_2614	-	lytic transglycosylase, catalytic
2590	 65.75	0	2651898..2653199	-	433	146278648	-	Rsph17025_2615	-	xylose isomerase
2591	 73.00	+1	2653196..2654632	-	478	146278649	-	Rsph17025_2616	-	xylulokinase
2592	 65.77	0	2654633..2655415	-	260	146278650	-	Rsph17025_2617	-	ABC transporter related
2593	 67.74	0	2655412..2656710	-	432	146278651	-	Rsph17025_2618	-	inner-membrane translocator
2594	 67.93	0	2656789..2657814	-	341	146278652	-	Rsph17025_2619	-	D-xylose ABC transporter, periplasmic substrate-binding protein
2595	 71.36	0	2658009..2659286	+	425	146278653	-	Rsph17025_2620	-	ROK family protein
2596	 69.00	0	2659415..2661298	+	627	146278654	-	Rsph17025_2621	-	surface antigen (D15)
2597	 70.63	0	2661298..2665128	+	1276	146278655	-	Rsph17025_2622	-	hypothetical protein
2598	 67.98	0	2665132..2665968	-	278	146278656	-	Rsph17025_2623	-	putative ribonuclease BN
2599	 66.24	0	2666043..2666276	-	77	146278657	-	Rsph17025_2624	-	hypothetical protein
2600	 62.42	-1	2666361..2667020	-	219	146278658	-	Rsph17025_2625	-	hypothetical protein
2601	 65.97	0	2667017..2669179	-	720	146278659	-	Rsph17025_2626	-	protein of unknown function DUF940, membrane lipoprotein putative
2602	 65.39	0	2669273..2671159	-	628	146278660	-	Rsph17025_2627	-	polysaccharide biosynthesis protein CapD
2603	 63.72	-1	2671306..2671950	-	214	146278661	-	Rsph17025_2628	-	sugar transferase
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.