IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1185	 64.22	-1	1237919..1238245	-	108	146277243	-	Rsph17025_1196	-	iron-sulfur cluster assembly accessory protein
1186	 67.37	0	1238320..1239456	+	378	146277244	-	Rsph17025_1197	-	putative deoxyguanosinetriphosphate triphosphohydrolase
1187	 67.70	0	1239562..1240530	+	322	146277245	-	Rsph17025_1198	-	putative ribonuclease BN
1188	 76.55	+2	1240539..1241681	-	380	146277246	-	Rsph17025_1199	-	iron-containing alcohol dehydrogenase
1189	 71.59	0	1241678..1243159	-	493	146277247	-	Rsph17025_1200	-	glycerol kinase
1190	 66.43	0	1243317..1245035	-	572	146277248	-	Rsph17025_1201	-	extracellular solute-binding protein
1191	 68.86	0	1245094..1245366	-	90	146277249	-	Rsph17025_1202	-	small integral membrane protein-like protein
1192	 68.52	0	1245379..1245702	-	107	146277250	-	Rsph17025_1203	-	hypothetical protein
1193	 62.44	-1	1245702..1246505	-	267	146277251	-	Rsph17025_1204	-	binding-protein-dependent transport systems inner membrane component
1194	 62.66	-1	1246543..1247415	-	290	146277252	-	Rsph17025_1205	-	binding-protein-dependent transport systems inner membrane component
1195	 68.97	0	1247415..1248500	-	361	146277253	-	Rsph17025_1206	-	ABC transporter related
1196	 69.61	0	1248511..1249599	-	362	146277254	-	Rsph17025_1207	-	ABC transporter related
1197	 71.28	0	1249721..1251325	-	534	146277255	glpD	Rsph17025_1208	-	glycerol-3-phosphate dehydrogenase
1198	 70.65	0	1251473..1251748	-	91	146277256	-	Rsph17025_1209	-	hypothetical protein
1199	 73.28	+1	1251939..1252316	+	125	146277257	-	Rsph17025_1210	-	hypothetical protein
1200	 68.21	0	1252358..1254691	-	777	146277258	-	Rsph17025_1211	-	quinoprotein glucose dehydrogenase
1201	 64.95	0	1254844..1255485	-	213	146277259	-	Rsph17025_1212	-	PRC-barrel domain-containing protein
1202	 71.50	0	1255906..1256733	-	275	146277260	-	Rsph17025_1213	-	hypothetical protein
1203	 72.26	+1	1256798..1257745	-	315	146277261	-	Rsph17025_1214	-	transport-associated
1204	 66.40	0	1258546..1258920	-	124	146277262	-	Rsph17025_1215	-	response regulator receiver protein
1205	 70.12	0	1259063..1259815	+	250	146277263	-	Rsph17025_1216	-	MgtC/SapB transporter
1206	 72.48	+1	1259841..1260098	-	85	146277264	-	Rsph17025_1217	-	hypothetical protein
1207	 71.94	+1	1260095..1262635	-	846	146277265	-	Rsph17025_1218	-	ATP dependent DNA ligase
1208	 63.85	-1	1263283..1263495	-	70	146277266	-	Rsph17025_1219	-	hypothetical protein
1209	 66.67	0	1263622..1264125	+	167	146277267	-	Rsph17025_1220	-	ECF subfamily RNA polymerase sigma-24 factor
1210	 71.81	+1	1264433..1265365	+	310	146277268	-	Rsph17025_1221	-	malonyl CoA-acyl carrier protein transacylase
1211	 74.05	+1	1265473..1266393	-	306	146277269	xerC	Rsph17025_1222	-	site-specific tyrosine recombinase XerC
1212	 69.86	0	1266390..1267079	-	229	146277270	-	Rsph17025_1223	-	hypothetical protein
1213	 65.15	0	1267102..1267761	-	219	146277271	-	Rsph17025_1224	-	putative translaldolase
1214	 73.83	+1	1267857..1270049	+	730	146277272	-	Rsph17025_1225	-	primosome assembly protein PriA
1215	 68.59	0	1270174..1270848	+	224	146277273	-	Rsph17025_1226	-	peptide methionine sulfoxide reductase
1216	 70.32	0	1270912..1271787	+	291	146277274	-	Rsph17025_1227	-	ribosomal L11 methyltransferase
1217	 71.30	0	1271904..1272248	+	114	146277275	-	Rsph17025_1228	-	hypothetical protein
1218	 69.26	0	1272378..1272608	-	76	146277276	-	Rsph17025_1229	-	hypothetical protein
1219	 67.46	0	1272898..1273404	+	168	146277277	ruvC	Rsph17025_1230	-	Holliday junction resolvase
1220	 71.26	0	1273401..1274075	+	224	146277278	ruvA	Rsph17025_1231	-	Holliday junction DNA helicase motor protein
1221	 69.22	0	1274163..1275062	+	299	146277279	-	Rsph17025_1232	-	heat shock protein HtpX
1222	 71.83	+1	1275136..1276161	+	341	146277280	ruvB	Rsph17025_1233	-	Holliday junction DNA helicase B
1223	 65.20	0	1276183..1276524	-	113	146277281	-	Rsph17025_1234	-	small multidrug resistance protein
1224	 70.08	0	1276768..1277382	+	204	146277282	-	Rsph17025_1235	-	hypothetical protein
1225	 73.85	+1	1277395..1278048	-	217	146277283	-	Rsph17025_1236	-	dTMP kinase
1226	 68.12	0	1278061..1279230	-	389	146277284	-	Rsph17025_1237	-	Serine-type D-Ala-D-Ala carboxypeptidase
1227	 73.94	+1	1279248..1280003	-	251	146277285	-	Rsph17025_1238	-	sporulation domain-containing protein
1228	 68.43	0	1280304..1280699	+	131	146277286	-	Rsph17025_1239	-	rhodanese domain-containing protein
1229	 70.50	0	1280991..1282739	+	582	146277287	-	Rsph17025_1240	-	transcriptional regulator NifA
1230	 68.56	0	1282934..1284409	+	491	146277288	-	Rsph17025_1241	-	nitrogenase cofactor biosynthesis protein NifB
1231	 74.82	+1	1284547..1285380	+	277	146277289	-	Rsph17025_1242	-	LRV FeS4 cluster domain-containing protein
1232	 63.51	-1	1285373..1285657	+	94	146277290	-	Rsph17025_1243	-	NifZ family protein
1233	 67.59	0	1285654..1285869	+	71	146277291	-	Rsph17025_1244	-	NifT/FixU family protein
1234	 71.10	0	1285874..1286707	+	277	146277292	-	Rsph17025_1245	-	hypothetical protein
1235	 63.37	-1	1287119..1288057	+	312	146277293	nifH	Rsph17025_1246	-	nitrogenase reductase
1236	 62.89	-1	1288119..1289600	+	493	146277294	-	Rsph17025_1247	-	nitrogenase molybdenum-iron protein alpha chain
1237	 63.77	-1	1289700..1291220	+	506	146277295	-	Rsph17025_1248	-	nitrogenase molybdenum-iron protein beta chain
1238	 68.45	0	1291327..1292949	+	540	146277296	-	Rsph17025_1249	-	nitrogenase MoFe cofactor biosynthesis protein NifE
1239	 72.30	+1	1292949..1294316	+	455	146277297	-	Rsph17025_1250	-	nitrogenase molybdenum-iron cofactor biosynthesis protein NifN
1240	 68.57	0	1294288..1294761	+	157	146277298	-	Rsph17025_1251	-	nitrogen fixation protein NifX
1241	 65.82	0	1294761..1295231	+	156	146277299	-	Rsph17025_1252	-	hypothetical protein
1242	 62.09	-1	1295310..1295615	+	101	146277300	-	Rsph17025_1253	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1243	 70.56	0	1295596..1296135	+	179	146277301	-	Rsph17025_1254	-	NifQ family protein
1244	 63.86	-1	1296303..1296623	+	106	146277302	-	Rsph17025_1255	-	iron-sulfur cluster assembly accessory protein
1245	 72.31	+1	1296633..1297358	+	241	146277303	-	Rsph17025_1256	-	NifU domain-containing protein
1246	 72.08	+1	1297358..1298521	+	387	146277304	-	Rsph17025_1257	-	aminotransferase, class V
1247	 73.49	+1	1298521..1299693	+	390	146277305	-	Rsph17025_1258	-	homocitrate synthase
1248	 66.06	0	1299705..1300031	+	108	146277306	nifW	Rsph17025_1259	-	nitrogenase stabilizing/protective protein
1249	 71.88	+1	1300110..1301414	+	434	146277307	-	Rsph17025_1260	-	RNA polymerase, sigma 54 subunit, RpoN
1250	 66.20	0	1301422..1301853	-	143	146277308	-	Rsph17025_1261	-	hypothetical protein
1251	 66.36	0	1301864..1302523	-	219	146277309	-	Rsph17025_1262	-	Hly-III family protein
1252	 68.53	0	1302674..1303477	+	267	146277310	-	Rsph17025_1263	-	Ku domain-containing protein
1253	 69.82	0	1303687..1304511	+	274	146277311	-	Rsph17025_1264	-	hypothetical protein
1254	 74.34	+1	1304805..1305299	-	164	146277312	-	Rsph17025_1265	-	hypothetical protein
1255	 61.58	-1	1305371..1305547	+	58	146277313	-	Rsph17025_1266	-	hypothetical protein
1256	 65.08	0	1306661..1308745	+	694	146277314	-	Rsph17025_1267	-	hypothetical protein
1257	 66.67	0	1308742..1309401	+	219	146277315	-	Rsph17025_1268	-	hypothetical protein
1258	 70.87	0	1309398..1309778	+	126	146277316	-	Rsph17025_1269	-	hypothetical protein
1259	 69.49	0	1309790..1310179	+	129	146277317	-	Rsph17025_1270	-	hypothetical protein
1260	 72.87	+1	1310339..1312063	-	574	146277318	-	Rsph17025_1271	-	hypothetical protein
1261	 59.85	-2	1313514..1314305	-	263	146277319	-	Rsph17025_1272	-	putative phage repressor
1262	 69.66	0	1314329..1314595	+	88	146277320	-	Rsph17025_1273	-	hypothetical protein
1263	 69.96	0	1314607..1314879	+	90	146277321	-	Rsph17025_1274	-	histone family protein DNA-binding protein
1264	 64.15	-1	1315211..1315567	+	118	146277322	-	Rsph17025_1275	-	hypothetical protein
1265	 68.48	0	1315564..1315839	+	91	146277323	-	Rsph17025_1276	-	hypothetical protein
1266	 72.98	+1	1315839..1316123	+	94	146277324	-	Rsph17025_1277	-	hypothetical protein
1267	 68.17	0	1316125..1316991	+	288	146277325	-	Rsph17025_1278	-	nuclease
1268	 70.16	0	1316988..1319105	+	705	146277326	-	Rsph17025_1279	-	integrase catalytic subunit
1269	 69.48	0	1319150..1319932	+	260	146277327	-	Rsph17025_1280	-	hypothetical protein
1270	 71.13	0	1319935..1320516	+	193	146277328	-	Rsph17025_1281	-	hypothetical protein
1271	 70.34	0	1320513..1320893	+	126	146277329	-	Rsph17025_1282	-	hypothetical protein
1272	 69.05	0	1320890..1321351	+	153	146277330	-	Rsph17025_1283	-	chromosomal replication initiator DnaA domain-containing protein
1273	 66.37	0	1321532..1322194	+	220	146277331	-	Rsph17025_1284	-	hypothetical protein
1274	 62.96	-1	1322169..1322573	-	134	146277332	-	Rsph17025_1285	-	hypothetical protein
1275	 68.49	0	1322633..1323070	+	145	146277333	-	Rsph17025_1286	-	hypothetical protein
1276	 68.27	0	1323067..1323378	+	103	146277334	-	Rsph17025_1287	-	hypothetical protein
1277	 68.98	0	1323375..1323980	+	201	146277335	-	Rsph17025_1288	-	MT-A70 family protein
1278	 72.04	+1	1323977..1324348	+	123	146277336	-	Rsph17025_1289	-	hypothetical protein
1279	 58.45	-2	1324372..1325418	-	348	146277337	-	Rsph17025_1290	-	hypothetical protein
1280	 68.38	0	1325607..1326479	+	290	146277338	-	Rsph17025_1291	-	N-acetylmuramoyl-L-alanine amidase
1281	 70.83	0	1326492..1326923	+	143	146277339	-	Rsph17025_1292	-	hypothetical protein
1282	 66.95	0	1326920..1327270	+	116	146277340	-	Rsph17025_1293	-	hypothetical protein
1283	 70.59	0	1327267..1327572	+	101	146277341	-	Rsph17025_1294	-	hypothetical protein
1284	 65.93	0	1327574..1328113	+	179	146277342	-	Rsph17025_1295	-	hypothetical protein
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.